Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30965X
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    27   2.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    26   3.4  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   3.4  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   6.0  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   6.0  

>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -1

Query: 537 LLVLVVIAG---IPSAARE*WESICGGDLN 457
           ++VLV  AG    P   RE WE+I G DLN
Sbjct: 776 VVVLVSTAGQGEFPQNGREFWEAIKGADLN 805


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = +3

Query: 369 PTSTLIISSASYDLLPLMASSLHTSRLAPCSNPHRKLTPTIRELRTVFPRSRPGPEGRTH 548
           PTST    + S  L     S   ++ + P  N    +TPT+    T    + P P   + 
Sbjct: 265 PTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSS 324

Query: 549 SGSGT 563
           +G+ +
Sbjct: 325 TGTSS 329



 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 357 STCLPTSTLIISSASYDLLPLMASSLHTSR-LAPCSNPHRKLTPTIRELRTVFPRSRPGP 533
           ST  P ++   +  S   LP  ++S  TS  + P  N    +TPT+    T    + P P
Sbjct: 314 STPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPP 373

Query: 534 EGRTHSGSGT 563
              + +G+ +
Sbjct: 374 ASTSSTGTSS 383


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 146 IALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYGS 250
           +++  PTF W          ++C  TRC YY+ GS
Sbjct: 147 VSVDQPTFQW---------GWLCVNTRCLYYDTGS 172


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 67  WYV*RVHAIISVLGRSIDGQS 5
           WYV R HA ISV  +S DG +
Sbjct: 55  WYVNRRHAPISVYFKSTDGHT 75


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 5   RLPIDAPAQHADDSMDPLDVPQGSTAPQRT 94
           RLP D P    DD++  L     S APQ T
Sbjct: 253 RLPHDPPDLEGDDNIPDLPKRPASIAPQPT 282


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 53  PLDVPQGSTAPQRTARHGRYSRTEHVMTNG 142
           P D PQGS+ P  T     +S   H  T+G
Sbjct: 18  PYDPPQGSSRPFFTVLKRAFSSVLHPFTSG 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,580
Number of Sequences: 5004
Number of extensions: 40332
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)