Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30965X
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0166 + 1412918-1413309,1413845-1414006,1414534-1414720,141... 30 1.1
11_07_0005 + 27237673-27237885,27238030-27238195,27238439-272386... 30 1.5
09_02_0276 - 6633919-6634296,6635432-6635533,6635636-6635728,663... 30 1.5
01_06_1346 - 36478844-36479266,36479369-36479728,36479820-364801... 30 1.5
12_01_0356 - 2707820-2708395,2708475-2708705,2709071-2709190,270... 29 2.0
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 29 3.5
12_01_0921 - 9102983-9103360,9104505-9104606,9104709-9104801,910... 29 3.5
08_02_1244 - 25537090-25537467,25538612-25538713,25538816-255389... 29 3.5
08_02_1079 + 24190453-24190483,24191201-24191475,24191619-241919... 29 3.5
08_02_0985 + 23299996-23300208,23300355-23300520,23300790-233010... 29 3.5
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 29 3.5
06_03_0523 - 21734045-21734301,21734452-21734578 28 4.6
08_01_0541 + 4702930-4703328,4703411-4703506,4703601-4703649,470... 28 6.1
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493... 28 6.1
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 28 6.1
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666... 27 8.0
06_02_0317 - 14261586-14261783,14262010-14262034,14262381-142625... 27 8.0
06_02_0085 + 11555539-11555632,11555767-11555867,11556947-115570... 27 8.0
02_01_0655 + 4867737-4868642 27 8.0
>01_01_0166 +
1412918-1413309,1413845-1414006,1414534-1414720,
1415221-1415646,1416028-1416036,1416361-1416768,
1417397-1417654
Length = 613
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -1
Query: 207 KSLISPQCWGSQWKVGAFSAMHPLVMTCSVLEYRPCRAVRCG 82
KS + W S VG F V++C RP R V CG
Sbjct: 124 KSFVRAFVWDSGSTVGEFDGHSKRVLSCDFKPTRPFRIVTCG 165
>11_07_0005 +
27237673-27237885,27238030-27238195,27238439-27238692,
27238777-27238989,27239063-27239155,27239258-27239359,
27240495-27240872
Length = 472
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 58 RRTTRKHCSTTHRPTWSVFQDGTRHD*RVHRAESSDLPLGAPT 186
R+T RK C+T +PT+ + G R RV +++P G T
Sbjct: 74 RQTRRKKCATKKKPTFKM-PPGVRISKRVRAGAPTEMPPGVST 115
>09_02_0276 -
6633919-6634296,6635432-6635533,6635636-6635728,
6635802-6636014,6636099-6636352,6636596-6636761,
6636906-6637118
Length = 472
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 58 RRTTRKHCSTTHRPTWSVFQDGTRHD*RVHRAESSDLPLGAPT 186
R+T RK C+T +PT+ + G R RV +++P G T
Sbjct: 74 RQTRRKKCATKKKPTFKM-PPGVRISKRVRAGAPTEMPPGVST 115
>01_06_1346 -
36478844-36479266,36479369-36479728,36479820-36480110,
36480193-36480267,36482292-36482446,36482549-36482665,
36482757-36482976
Length = 546
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 97 PTWSVFQDGTRHD*RVHRAESSDLPLGAPTLRR 195
PTW F DGTR + R SDL + P LR+
Sbjct: 152 PTWQSFPDGTRLEVMTSRPR-SDLYINLPALRK 183
>12_01_0356 -
2707820-2708395,2708475-2708705,2709071-2709190,
2709281-2709401,2711588-2712027
Length = 495
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 402 SLPMRLLRLKWVGRCSERGGGGEDDVIGW 316
+L + LLR +G +E GGGGE IGW
Sbjct: 82 ALLLALLRKSLLGCSAEDGGGGEGMEIGW 110
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 20 APAQHADDSMDPLDVPQGSTAPQRTARH 103
AP++HA S P P ++AP + RH
Sbjct: 79 APSRHATPSSSPPSTPSSASAPPPSGRH 106
>12_01_0921 -
9102983-9103360,9104505-9104606,9104709-9104801,
9104875-9105087,9105172-9105412,9105501-9105859,
9106006-9106218
Length = 532
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 58 RRTTRKHCSTTHRPTWSVFQDGTRHD*RVHRAESSDLPLGAPT 186
R+T RK C+T +PT + G R RV +++P G T
Sbjct: 74 RQTRRKKCATKKKPTLKM-PPGVRISKRVRAGAPTEMPPGVST 115
>08_02_1244 -
25537090-25537467,25538612-25538713,25538816-25538908,
25538982-25539194,25539279-25539532,25539801-25539966,
25540114-25540326
Length = 472
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 58 RRTTRKHCSTTHRPTWSVFQDGTRHD*RVHRAESSDLPLGAPT 186
R+T RK C+T +PT + G R RV +++P G T
Sbjct: 74 RQTRRKKCATKKKPTLKM-PPGVRISKRVRAGAPTEMPPGVST 115
>08_02_1079 +
24190453-24190483,24191201-24191475,24191619-24191977,
24192066-24192306,24192391-24192603,24192677-24192769,
24192872-24192973,24194104-24194481
Length = 563
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 58 RRTTRKHCSTTHRPTWSVFQDGTRHD*RVHRAESSDLPLGAPT 186
R+T RK C+T +PT + G R RV +++P G T
Sbjct: 105 RQTRRKKCATKKKPTLKM-PPGVRISKRVRAGAPTEMPPGVST 146
>08_02_0985 +
23299996-23300208,23300355-23300520,23300790-23301043,
23301128-23301340,23301414-23301506,23301609-23301710,
23302852-23303229
Length = 472
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 58 RRTTRKHCSTTHRPTWSVFQDGTRHD*RVHRAESSDLPLGAPT 186
R+T RK C+T +PT + G R RV +++P G T
Sbjct: 74 RQTRRKKCATKKKPTLKM-PPGVRISKRVRAGAPTEMPPGVST 115
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 464 SPPQIDSHYSRAADGIPAITTRTRRKNPLRVRYEDD 571
S P S +R +D T +RK P V+Y+DD
Sbjct: 324 SSPAPSSSVARPSDSTSVATIAPKRKRPRLVKYDDD 359
>06_03_0523 - 21734045-21734301,21734452-21734578
Length = 127
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 8 LPIDAPAQHADDSMDPLDVPQGSTAPQRTARHGRYSRT 121
LP AP Q A M+PL + + AP R RH R+ T
Sbjct: 75 LPTGAPPQPAQ--MEPLGARRRTRAPPRRLRHRRHPLT 110
>08_01_0541 +
4702930-4703328,4703411-4703506,4703601-4703649,
4703771-4703865
Length = 212
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +2
Query: 26 AQHADDSMDPLDVPQGSTAPQRTARHGRYSRTEHVMTNGCIAL 154
A H D LD G +A A H R S+ + T C+ L
Sbjct: 100 ASHLDSLKRRLDALHGDSARDLEASHSRISKRFKMQTQSCLQL 142
>05_05_0070 +
22148595-22148907,22148988-22149104,22149196-22149350,
22149987-22150061,22150179-22150469,22150942-22151292,
22151390-22151794
Length = 568
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 97 PTWSVFQDGTRHD*RVHRAESSDLPLGAPTLRR 195
PTW F DG++ + R SDL + P LR+
Sbjct: 183 PTWQTFPDGSKLEIMTSRPR-SDLYINLPALRK 214
>04_04_1228 +
31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 499 CGRYSRDHDQDQKEEPTQGPVRR 567
CG DHD +++EE T G +R+
Sbjct: 159 CGWSYNDHDSEEEEEATGGGIRK 181
>11_06_0425 -
23365108-23366028,23366182-23366340,23366445-23366640,
23366995-23367527,23367817-23368272,23368507-23368758,
23368890-23369007,23369836-23369993
Length = 930
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 102 CRAVRCGAVLPCGTSRGSMLSSACWAGASMG 10
C+A RC AV G G S+ C +G G
Sbjct: 706 CKAARCKAVAASGGGGGQAESAGCGSGCGGG 736
>06_02_0317 -
14261586-14261783,14262010-14262034,14262381-14262506,
14263124-14263204,14265424-14265626,14266278-14266418
Length = 257
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 486 WESICGGDLNKALVLRCADW-RPSREEGRSLPMRLLRLKWVG 364
W+ GG LN A + C +W ++ G MR L++ VG
Sbjct: 168 WKKEQGGALNSAAFITCGNWDLKTKATGMMTMMRELQMPIVG 209
>06_02_0085 +
11555539-11555632,11555767-11555867,11556947-11557056,
11557152-11557227,11557412-11557555,11558432-11558503,
11558601-11559470
Length = 488
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 65 PQGSTAPQRTARHGRYSRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNY 244
P GS P T H T H +T IA A + ++ + E++ I E + +
Sbjct: 400 PSGSNHPAPTQYHPSADTTTHQVTPPAIAPPASQYKYDSSYQPEVEK-IAEAHKAARFAV 458
Query: 245 GSIPF 259
G++ F
Sbjct: 459 GALAF 463
>02_01_0655 + 4867737-4868642
Length = 301
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 108 RPCRAVRCGAVLPCGTSRGSMLSSACWAGASMGSL 4
RPC+ V G P G+ R + C +G+ G +
Sbjct: 123 RPCKRVSPGPGSPTGSERSELSHGGCGSGSGGGQV 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,579,327
Number of Sequences: 37544
Number of extensions: 352786
Number of successful extensions: 1146
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -