Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30965X
(573 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024) 31 0.88
SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05) 31 0.88
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) 30 1.5
SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26) 30 1.5
SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39) 29 2.7
SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_43181| Best HMM Match : rve (HMM E-Value=1e-25) 29 3.6
SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16) 28 4.7
SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_52329| Best HMM Match : DUF1059 (HMM E-Value=2.8) 28 4.7
SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16) 28 4.7
SB_43653| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 4.7
SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_28715| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 4.7
SB_22427| Best HMM Match : rve (HMM E-Value=7.5e-12) 28 4.7
SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_4788| Best HMM Match : rve (HMM E-Value=0) 28 4.7
SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26) 28 4.7
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_46362| Best HMM Match : rve (HMM E-Value=3e-26) 28 4.7
SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15) 28 4.7
SB_21749| Best HMM Match : RnaseH (HMM E-Value=1.6) 28 4.7
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 27 8.2
>SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)
Length = 414
Score = 30.7 bits (66), Expect = 0.88
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 474 KLTPTIRELRTVFPRSRPGPEGRTHSGSGTK 566
KL P +REL+ + P R P GR S G K
Sbjct: 255 KLCPEVRELKVLRPTQRQVPRGRVKSMEGQK 285
>SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05)
Length = 397
Score = 30.7 bits (66), Expect = 0.88
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 437 HLKTSALFKSPPQIDSHYSRAADGIPAI 520
++ LF++ P + HYS++ADG+P +
Sbjct: 111 YIDDGPLFETLPHVIDHYSKSADGLPVL 138
>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
Length = 1168
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 408 LLPLMASSLHTSRLAPCSNPHRKLTPTIRELRTVFPRSR 524
++P + + LH + + H+ + PT LRT+FP S+
Sbjct: 817 VIPHITNQLHHTYKIRYTRHHKSIQPTATRLRTIFPVSK 855
>SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 383
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I E C + G
Sbjct: 131 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITECEVCLTHRSG 174
>SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I E C + G
Sbjct: 328 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITECEVCLTHRSG 371
>SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)
Length = 894
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 32 HADDS-MDPLDVPQGSTAPQRTARHGRYSRTEHVMTNG 142
H+D S ++ + G+TA RHG + EH++ NG
Sbjct: 446 HSDKSFVNSREHSSGNTALHMACRHGHFDIVEHLLENG 483
>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 969
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = -1
Query: 135 VMTCSVLEYRPCRAVRCGAVLPCGTSRGSML----SSACWAGASMGSL 4
V C + CR V+C V+ C S+ L SS WA + GSL
Sbjct: 361 VCACRYVRSVACRYVQCVHVVMCAKSKRQRLSRQRSSHSWASCARGSL 408
>SB_43181| Best HMM Match : rve (HMM E-Value=1e-25)
Length = 341
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I + C ++ G
Sbjct: 131 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHHSG 174
>SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16)
Length = 608
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 271 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 314
>SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 854 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 897
>SB_52329| Best HMM Match : DUF1059 (HMM E-Value=2.8)
Length = 364
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 274 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 317
>SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 869
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 651 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 694
>SB_43653| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 342
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 80 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 123
>SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1061
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 967 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 1010
>SB_28715| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 359
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 131 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 174
>SB_22427| Best HMM Match : rve (HMM E-Value=7.5e-12)
Length = 270
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 98 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 141
>SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 366 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 409
>SB_4788| Best HMM Match : rve (HMM E-Value=0)
Length = 1125
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 224 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 267
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 774 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 817
>SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26)
Length = 455
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 104 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 147
>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +2
Query: 122 EHVMTNGCIALKAPTF--HWEPQHCGEIKDFICEQ--TRCYYYN 241
+H C+ + A F +W C + ++FICE+ C+ +N
Sbjct: 884 DHSGKEDCVEMMAGYFAGYWNDNFCEQFRNFICEKPFDSCFEFN 927
>SB_46362| Best HMM Match : rve (HMM E-Value=3e-26)
Length = 455
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 104 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 147
>SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15)
Length = 630
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 390 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 433
>SB_21749| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 353
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 247
+ + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 245 THSSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 288
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/36 (25%), Positives = 17/36 (47%)
Frame = +2
Query: 113 SRTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQ 220
++ +H + C+ L A W C E F+C++
Sbjct: 1420 AKDDHDLGMDCVVLDAEEGKWRDSSCAEKNSFLCKR 1455
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,062,225
Number of Sequences: 59808
Number of extensions: 381614
Number of successful extensions: 1298
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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