Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30965X
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18060.1 68416.m02297 transducin family protein / WD-40 repea...    34   0.077
At5g59590.1 68418.m07467 UDP-glucoronosyl/UDP-glucosyl transfera...    31   0.72 
At2g23800.1 68415.m02842 geranylgeranyl pyrophosphate synthase (...    29   2.9  
At5g02010.1 68418.m00120 expressed protein contains Pfam profile...    28   3.8  
At4g11100.1 68417.m01802 expressed protein                             28   5.1  
At1g08440.1 68414.m00933 hypothetical protein contains Pfam prof...    28   5.1  
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c...    27   8.9  

>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
           family protein similar to 66 kDa stress protein
           (SP:P90587) [Physarum polycephalum (Slime mold)];
           similar to WDR1 protein GB:AAD05042 [Gallus gallus]
           (Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
           repeats (PF00400)
          Length = 609

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 207 KSLISPQCWGSQWKVGAFSAMHPLVMTCSVLEYRPCRAVRCG 82
           KSL+    W S   VG F      V++C++   RP R V CG
Sbjct: 123 KSLVRAFMWDSGSNVGEFDGHSRRVLSCAIKPTRPFRIVTCG 164


>At5g59590.1 68418.m07467 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 449

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 468 GDLNKALVLRCADWRPSREEGRSLPMRLLRLKWVGRCSERGGG 340
           GDL+K  V R  +W    EEG  +  R + LK     S R GG
Sbjct: 394 GDLDKETVERAVEWLLVDEEGAEMRKRAIDLKEKIETSVRSGG 436


>At2g23800.1 68415.m02842 geranylgeranyl pyrophosphate synthase
           (GGPS2) (GGPS5) / GGPP synthetase /
           farnesyltranstransferase identical to GB:U44876;
           sequence disagrees at N-Terminus, sequence submitted has
           been confirmed from three electropherograms.
          Length = 376

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 172 VEGRSFQRDAPVSHDVFRPGIPTMSGGALWSSA 74
           ++    +R  P +H V+  G+  +SGGAL S A
Sbjct: 169 MDNDDLRRGKPTTHKVYGEGVAILSGGALLSLA 201


>At5g02010.1 68418.m00120 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 546

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 97  PTWSVFQDGTRHD*RVHRAESSDLPLGAPTLRR 195
           PTW  F DGT+ +    R   SDL +  P LR+
Sbjct: 148 PTWQTFPDGTKLEIMTCRPR-SDLYVNLPALRK 179


>At4g11100.1 68417.m01802 expressed protein
          Length = 287

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 553 PEWVLPSGPGRD 518
           PEW +P GPG+D
Sbjct: 272 PEWAIPKGPGKD 283


>At1g08440.1 68414.m00933 hypothetical protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 501

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +3

Query: 357 STCLPTSTLIISSASYDLLPLMASSLHT--SRLAPCSNPHRKLTPTIRELRTVFPRSRPG 530
           S C   STL+ S    D+ PL   SL T  S L    N   K++ ++ EL +        
Sbjct: 343 SACKTLSTLLKSGILNDVEPLQMISLMTTVSLLIDIVNLTEKISESVHELASAAKFKNKK 402

Query: 531 PEGRTHSGS 557
              +++SGS
Sbjct: 403 KPSKSNSGS 411


>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
           contains Pfam PF02138: Beige/BEACH domain; similar to
           LBA isoform gamma (GI:10257405) [Mus musculus]; similar
           to beige-like protein (CDC4L) - Homo sapiens; similar to
           Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
           protein homolog implicated in neuronal membrane traffic
           (AKAP550) (GI:11863541) [Drosophila melanogaster].
          Length = 1928

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 408 LLPLMASSLHTSRLAPCS 461
           LLPL  SS+H   L PCS
Sbjct: 324 LLPLTVSSVHKDNLEPCS 341


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,249,423
Number of Sequences: 28952
Number of extensions: 242405
Number of successful extensions: 660
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)