Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30964
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 76 5e-15
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 43 5e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 39 7e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.001
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 37 0.004
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 37 0.004
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 36 0.005
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 36 0.006
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 34 0.025
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 33 0.044
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.058
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.10
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 32 0.10
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 32 0.10
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 31 0.23
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 30 0.31
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 29 0.54
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 29 0.54
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 29 0.71
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 29 0.71
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 0.71
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.6
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 28 1.6
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 2.2
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 2.9
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.9
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.9
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 3.8
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 3.8
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 6.6
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 6.6
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 8.8
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 8.8
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 25 8.8
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 76.2 bits (179), Expect = 5e-15
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 435
+F +GE+ V D TGRSRGF F+ FK P+ +++VM+ EH ++ K +DPK+A R
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPR 240
Query: 436 H-----GKIFVGGLSSEISDDEIRNFFSE 507
K+FVGG+ + +++E RNFF++
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQ 269
Score = 53.2 bits (122), Expect = 4e-08
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 674
G +L+ + DK + +GF F+T+E+E V + P TI GK V+VKRATPK
Sbjct: 271 GRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +2
Query: 80 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELRV 256
+ +N D +NQ + +G +S + N+ E +P +D K+F+GGL+WETTD LR
Sbjct: 123 DGENSKNDNYNENQ-SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 257 ILE 265
E
Sbjct: 182 YFE 184
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 426
F +G + + D +TGR RGF F+ ++ +++ M+ TI+ K V+ K+A
Sbjct: 267 FNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/57 (31%), Positives = 36/57 (63%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 680
G +L+ + D T + +GF F+TF++ + VN+++ + + + GK +D KRA P+ +
Sbjct: 187 GEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKRAIPREE 242
Score = 32.7 bits (71), Expect = 0.058
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +1
Query: 439 GKIFVGGLSSEISDDEIRNFFSE 507
GK+F+GGL+ E +DD +R++F +
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQ 185
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 42.7 bits (96), Expect = 5e-05
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 396
FG G+I+SI + TDP +GR +GF ++ F +S K + H I
Sbjct: 386 FGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFI 431
Score = 35.9 bits (79), Expect = 0.006
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVD 414
F YG I V D +GRS+G+ ++ F+ PE+ +AA G I+ + V+
Sbjct: 283 FEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVN 335
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 674
G I + +P D + KGF ++TF ++ I G+ + +TP+
Sbjct: 390 GDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEQVVN-DLLKTPKRTIGGKEVDVKRATPKP 677
GTI+ + D + KG+ ++ FE+ + + + I G+ V++ + P+P
Sbjct: 287 GTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 39.1 bits (87), Expect = 7e-04
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 387
+FG G I+ + + DP T +GFA+I FK +DK + E
Sbjct: 289 YFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNE 332
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES--IDKVMAAGEHTI-NNKKVDPKKA 426
HF G++ S+ + TD +GR +G+AF+ F P++ I K + HTI +K++ +
Sbjct: 111 HFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALKF-HHTIYKERKINIELT 169
Query: 427 KARHGK 444
GK
Sbjct: 170 AGGGGK 175
Score = 28.7 bits (61), Expect = 0.94
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITF 584
G + V +P DKT ++KG+ F+ F
Sbjct: 116 GQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVDPKK 423
HF + G + + + D TG +GFA+I F P + + ++ + KV PK+
Sbjct: 74 HFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKR 131
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 393
HFG G+I + + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 247 HFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 104 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELR 253
I ++ +G S ++ ++ LFVG L +ETTD +L+
Sbjct: 196 IKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLK 245
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 36.3 bits (80), Expect = 0.005
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 223 ELGDHR*GAPCHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
E+ D R A F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 374 EVDDERLKA--EFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
Score = 33.9 bits (74), Expect = 0.025
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------D 414
F + G + SI V D T RS G+A++ F E +K + +T+ + D
Sbjct: 100 FNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRD 159
Query: 415 PKKAKARHGKIFVGGLSSEISDDEIRNFFS 504
P K G +F+ L I + + + FS
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFS 189
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 253 CHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 360
C F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 49 CVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 33.9 bits (74), Expect = 0.025
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFK 348
F YG IE I V + TG+S G+AF+VF+
Sbjct: 120 FTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 33.1 bits (72), Expect = 0.044
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 268 YGE-IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 435
+GE + SI + DP T RSRGF ++ F+ +++ +A + + V A+ R
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 32.7 bits (71), Expect = 0.058
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 411
F G I+ V T+P TG +RG+ F+ F E D AA E + NKK+
Sbjct: 25 FSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAKE--LKNKKL 71
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFK 348
HF +G + + DP T RS G FI F+
Sbjct: 296 HFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.9 bits (69), Expect = 0.10
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 369
F +G+I S V D TG S +AFI F ES++K
Sbjct: 264 FSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 31.9 bits (69), Expect = 0.10
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDV 656
G + +V MP DK N KGF +I F +++ V L+ + G+ + V
Sbjct: 347 GQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHV 396
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 31.9 bits (69), Expect = 0.10
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 363
HF ++GE+ +++K +P TG S G I F SI
Sbjct: 113 HFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSI 148
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 30.7 bits (66), Expect = 0.23
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 217 WAELGDHR*GAPCHFGAYGEIESINVKTDPNT 312
WA G + +P + Y E+ES++VK++ +T
Sbjct: 157 WAGYGSEQSSSPLEYSEYEEVESLDVKSEKDT 188
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 30.3 bits (65), Expect = 0.31
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVF 345
F +G I+ + + D TGR++GFAF+ +
Sbjct: 222 FRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.5 bits (63), Expect = 0.54
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 423
F +G I S + PN+G S+G+ F+ F+ E+ + T+N V K+
Sbjct: 404 FSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA----AVRAKDTLNGMMVGKKR 454
Score = 29.1 bits (62), Expect = 0.71
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 394 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSE 507
+NN K+ P + + I+VG + S +SD+EI FS+
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSK 39
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.54
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDPKKAKAR 435
F +G I+S + + P+T S+G+ F+ F P E++ + K++ A+ R
Sbjct: 441 FSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKR 500
Query: 436 HGK 444
+
Sbjct: 501 EDR 503
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 29.1 bits (62), Expect = 0.71
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 357
F +G + + + +P T SRGF F+ F E
Sbjct: 121 FSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +1
Query: 364 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSE 507
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSK 123
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 29.1 bits (62), Expect = 0.71
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 519 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT-IGGKEVDVKRATP 671
+ V M +D+ + +G C + FE+ Q D KT + T + G E+ + + +P
Sbjct: 111 IRVIMNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQSTNLKGSEIQISKKSP 161
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 29.1 bits (62), Expect = 0.71
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 268 YGEIESINVKTDPNTGRSRGFAFIVF 345
Y +S + TDP T SRG+ F+ F
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 28.7 bits (61), Expect = 0.94
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 415 PKKAKARHGKIFVGGLSSEISDDEIRNFF 501
P+ A + +FVGGLS +S++E++ F
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLF 323
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKE--VDVKR 662
G I + MP K KG+C+I + +Q N + K + G+E V +KR
Sbjct: 123 GLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFVSIKR 176
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +1
Query: 271 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIF 450
GE+E V +P + ++F K+ A +++ +++DP K A +
Sbjct: 351 GEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVSALQQMLI 410
Query: 451 VGGLS 465
GG++
Sbjct: 411 AGGVN 415
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 322 RGFAFIVFKAPESIDKVMAAGEHTINNKK 408
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 268 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 405
+G++ S + + G S+GF F FK P + ++ G+ T NK
Sbjct: 333 FGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNK 380
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 213 TKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 100
T SFL + R +L C S P +AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 27.1 bits (57), Expect = 2.9
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 436 HGKIFVGGLSSEISDDEIRNFFSE 507
H ++FVG L ++++D+ + FSE
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSE 52
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 385 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSE 507
E TI K + K + + G ++VG L + ++R +FS+
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQ 127
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 152 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELRVILE 265
D+ H SAE P + DD ++FVG LS T E+R + E
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFE 65
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 378
F G + + D +GRS+G A++ F +S+ +A
Sbjct: 260 FEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 429 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 268
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -3
Query: 465 AESSDKNLPMSCFSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYIN 286
++ L M C +++ F +F S ++V +GLK++ SA V I + N
Sbjct: 1191 SDEETTQLAMDCLAVMAKRFSASPELFISPIEVVSGPYGLKNSARDVQVSAIVCITVLTN 1250
Query: 285 TL 280
TL
Sbjct: 1251 TL 1252
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 442 KIFVGGLSSEISDDEIRNFFS 504
+I+VGGLSS I ++ + FS
Sbjct: 6 RIYVGGLSSSIESSDLESRFS 26
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -3
Query: 747 GRRGLLWHRVRRGHFACLCLR 685
G R +W R G F C+C R
Sbjct: 171 GHRRYVWRRNENGRFQCVCGR 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,305
Number of Sequences: 5004
Number of extensions: 61399
Number of successful extensions: 234
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -