Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30964
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 70 2e-12
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 60 2e-09
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 57 1e-08
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 2e-07
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 46 4e-05
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 44 2e-04
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 40 0.002
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 40 0.002
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.007
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 38 0.012
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 38 0.012
SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.062
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 34 0.11
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 33 0.25
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 33 0.33
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 32 0.43
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.43
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 31 0.76
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.76
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 31 1.0
SB_41060| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_2941| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_28750| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 30 2.3
SB_46941| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3) 29 4.1
SB_1073| Best HMM Match : Ribosomal_L12 (HMM E-Value=2.2) 29 4.1
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 29 5.4
SB_39378| Best HMM Match : VWA (HMM E-Value=0) 29 5.4
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 28 7.1
SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_24568| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37) 28 7.1
SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 28 7.1
SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 28 7.1
SB_7551| Best HMM Match : zf-HIT (HMM E-Value=8.4) 28 7.1
SB_7529| Best HMM Match : Toxin_29 (HMM E-Value=0.0017) 28 7.1
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 28 9.4
SB_46960| Best HMM Match : Neuromodulin (HMM E-Value=3.6) 28 9.4
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 28 9.4
SB_20263| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 28 9.4
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 70.1 bits (164), Expect = 2e-12
Identities = 33/84 (39%), Positives = 54/84 (64%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 435
HF +GE++ V DP T RSRGF F+ FK P+++D V+ +G +++D KK
Sbjct: 127 HFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGA-----QELDGKKMVTT 181
Query: 436 HGKIFVGGLSSEISDDEIRNFFSE 507
KIF+GGLS+ S+++++ +FS+
Sbjct: 182 TKKIFIGGLSTNTSEEDMKKYFSQ 205
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/84 (39%), Positives = 44/84 (52%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 435
+F YGE+ +++K D TGR RGFAF+ FK D + I K R
Sbjct: 48 YFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEADAIDPKPAAPIG------KPPHLR 101
Query: 436 HGKIFVGGLSSEISDDEIRNFFSE 507
KIFVGGL E SD++IR +F +
Sbjct: 102 VKKIFVGGLKPETSDEKIREYFGK 125
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/53 (41%), Positives = 36/53 (67%)
Frame = +3
Query: 516 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 674
+ E+E + + N+R+GFCF++F+SE V+ + +T I G +V+VKRA PK
Sbjct: 130 VKEIEYITEHSSNRRRGFCFVSFDSEDTVDKICETQFHNIEGNKVEVKRALPK 182
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 256 HFG-AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 426
+FG AY ++ I T+ ++ R RGF F+ F + +++DK+ H I KV+ K+A
Sbjct: 122 YFGKAYAPVKEIEYITEHSSNRRRGFCFVSFDSEDTVDKICETQFHNIEGNKVEVKRA 179
Score = 36.7 bits (81), Expect = 0.020
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +2
Query: 149 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELR 253
G S D N DD KLFVGGLS+ETT + L+
Sbjct: 12 GTSLDSNKTRMTKDDDIGKLFVGGLSYETTKESLK 46
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +1
Query: 439 GKIFVGGLSSEISDDEIRNFFSE 507
GK+FVGGLS E + + ++ +FS+
Sbjct: 29 GKLFVGGLSYETTKESLKEYFSK 51
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/101 (29%), Positives = 62/101 (61%), Gaps = 12/101 (11%)
Frame = +1
Query: 244 GAPCHFGAYGEI-ESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK 420
G +F +G I + + +K D GRSRGF F+ +++ +S+++V+ +H +++++++PK
Sbjct: 65 GLKDYFSQWGTIVDCVIMKRD---GRSRGFGFVTYESSDSVNEVLKKKDHVLDDREIEPK 121
Query: 421 K-----------AKARHGKIFVGGLSSEISDDEIRNFFSEL 510
+ A ++ KIFVGGL+S +++I+ +F+ L
Sbjct: 122 RSVPRDESGAPEAMSKTRKIFVGGLASTTVEEDIKEYFNSL 162
Score = 44.8 bits (101), Expect = 8e-05
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 253 CHFGAYGEIESINVKTD-PNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 429
C GE+ +++K D N R RGFAF+ F E ++KV A H I K+ + KKA+
Sbjct: 163 CRKNGMGEVIDVDLKRDRDNPKRIRGFAFVTFDNDEIVEKVCAMKYHEIRMKQCEVKKAE 222
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 680
GTI V+ K + +GF F+T+ES VN++LK + +E++ KR+ P+ +
Sbjct: 74 GTI--VDCVIMKRDGRSRGFGFVTYESSDSVNEVLKKKDHVLDDREIEPKRSVPRDE 128
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/57 (28%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +3
Query: 507 IGTILEVEMPFDKTKNQR-KGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 674
+G +++V++ D+ +R +GF F+TF+++++V + I K+ +VK+A P+
Sbjct: 168 MGEVIDVDLKRDRDNPKRIRGFAFVTFDNDEIVEKVCAMKYHEIRMKQCEVKKAEPQ 224
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +2
Query: 200 RKLFVGGLSWETTDKELR 253
RK+F+GGL+W TT++ L+
Sbjct: 50 RKIFIGGLNWNTTEEGLK 67
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 53.6 bits (123), Expect = 2e-07
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD-----PK 420
+F +GEI+ VK DPNT RSRGF F+ FK E V++ H I + + PK
Sbjct: 134 YFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLST-SHRIQGRLCEVRLPRPK 192
Query: 421 KAKARHGKIFVGGLSSEISDDEIRNFFSE 507
+ K+FVG L ++ + +F++
Sbjct: 193 EELNVPKKLFVGRLPESTTEKTLMEYFAQ 221
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 46.4 bits (105), Expect = 2e-05
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVF---KAPESI--DKVMAAGEHTINNKKVDPK 420
+F AYGE+ + V D T +SRGF ++ F K ++ DKV G H I+ K+V+ K
Sbjct: 33 YFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKDKV-ENGAHRIDGKEVEVK 91
Query: 421 KAKARHG----------KIFVGGLSSEISDDEIRNFFSEL 510
+A R KIFVGGL + + ++I+ L
Sbjct: 92 RAIPRDDNSATSHEKTKKIFVGGLPEDATKEDIQEAIESL 131
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT----IGGKEVDVKRATPKP 677
G + +V + D + +GF ++TF +V ++LK I GKEV+VKRA P+
Sbjct: 38 GELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKDKVENGAHRIDGKEVEVKRAIPRD 97
Query: 678 D 680
D
Sbjct: 98 D 98
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +3
Query: 540 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 674
D+TK+ +GF F+ +E ++L K + GK V+ K+ATP+
Sbjct: 147 DETKH--RGFAFVELNNEDQADELCCVKKIHVKGKMVEAKKATPR 189
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +2
Query: 167 NSAEAPGRDDDRKLFVGGLSWETTDKELRVILE 265
N E D KLFVGGL+ ETT++ LR E
Sbjct: 3 NRQENTNNDPRAKLFVGGLNRETTNETLREYFE 35
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Frame = +2
Query: 92 FAQDITTDNQLNGNAENGGG--DSQDHNSAEAPGRDDD--------RKLFVGGLSWETTD 241
FA T N L ENG D ++ A RDD+ +K+FVGGL + T
Sbjct: 62 FADYKVTRNVLKDKVENGAHRIDGKEVEVKRAIPRDDNSATSHEKTKKIFVGGLPEDATK 121
Query: 242 KELRVILEHTVK*RV 286
++++ +E ++ +V
Sbjct: 122 EDIQEAIESLLEEKV 136
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +1
Query: 301 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 435
D T R RGF F+ F++ S DK H INNKKV+ KKA+ +
Sbjct: 5 DKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKAQPK 49
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +3
Query: 537 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 674
FDK + +GF F+TFESE + T I K+V+VK+A PK
Sbjct: 4 FDKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKAQPK 49
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 12/95 (12%)
Frame = +1
Query: 262 GAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAAGE-HTINNKKVDPKKAKAR 435
G+ ++ S+++ P G+SR F F+ F + ID ++ E H+I+NK+V+ K+A R
Sbjct: 34 GSEADVSSVSLAKTPE-GKSRKFCFVEFSNGSDIIDNIVFNFESHSIDNKQVEVKRAMPR 92
Query: 436 HG----------KIFVGGLSSEISDDEIRNFFSEL 510
K+F+GGL E S+++++ + L
Sbjct: 93 DDPNELAHVRTKKLFIGGLKDEHSEEDVKTALAPL 127
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +3
Query: 519 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 665
LE++M D+ N+ KG+CF+ F +E +V+ L + GK+V++K+A
Sbjct: 133 LEIKMVRDRETNKFKGYCFVNFPNEHIVDKLYLVRHIQVKGKDVEMKKA 181
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 286 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 426
I + D T + +G+ F+ F +DK+ + K V+ KKA
Sbjct: 135 IKMVRDRETNKFKGYCFVNFPNEHIVDKLYLVRHIQVKGKDVEMKKA 181
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/65 (29%), Positives = 38/65 (58%)
Frame = +1
Query: 310 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEI 489
+G+S+GFAF+ + E+++ V+ +H I+N V +K + + K+ + + S I + +I
Sbjct: 79 SGKSKGFAFVRLRKKEAVESVLGRDDHVIDNSDVSMEK-QDTYRKVILKNIPSSIGESQI 137
Query: 490 RNFFS 504
FS
Sbjct: 138 LEHFS 142
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEV 650
G I V +P + +RKG C +TF S +++K K I G ++
Sbjct: 145 GEIASVYIPENLKTKERKGHCIVTFASVTEAFEVVKKRKHHIHGYDI 191
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 21/82 (25%)
Frame = +1
Query: 322 RGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA---------------------KARH 438
+GF F+ F+ P +I+ V+A H ++ K +DPK A A
Sbjct: 142 KGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPRGPGQQAQTGAVMGGPQRGSAND 201
Query: 439 GKIFVGGLSSEISDDEIRNFFS 504
GK+F+GGL+ ++++++ +FS
Sbjct: 202 GKVFIGGLAFGTTEEDLKEYFS 223
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 537 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 674
F++ KGF F+TF + +L + GK +D K A P+
Sbjct: 134 FERRARMLKGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPR 179
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = +2
Query: 185 GRDDDRKLFVGGLSWETTDKELR 253
G +D K+F+GGL++ TT+++L+
Sbjct: 197 GSANDGKVFIGGLAFGTTEEDLK 219
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 41.5 bits (93), Expect = 7e-04
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Frame = +1
Query: 271 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK----AKAR- 435
GEI ++ DP TG ++GFAF F S + + T+N+K + P + K+R
Sbjct: 177 GEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQAIT----TLNDKDIRPGRRLAICKSRS 232
Query: 436 HGKIFVGGLSSEISDDEIRNFFSEL 510
+ ++FV G+ S +EI FS++
Sbjct: 233 NSRLFVKGIPKRKSKEEIFQEFSKV 257
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNK--KVD---PK 420
FG G + S + D TG+S G+AF+ + P+ +K V + NK KV P
Sbjct: 47 FGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFARPS 106
Query: 421 KAKARHGKIFVGGLSSEISDDEIRNFF 501
+ ++ +++ GL ++ ++E+ F
Sbjct: 107 STEIKNANLYISGLPKDMKEEEVEALF 133
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--DPK 420
FG YG IE +++ TG+S+GF ++ ++ ES + + AG H I+ K V +PK
Sbjct: 83 FGPYGAIEDLSI-IRTQTGKSKGFGYVTYENAESAQRAL-AGTHIIDGKWVIAEPK 136
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 40.3 bits (90), Expect = 0.002
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = +1
Query: 256 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 411
+F YG++ +++ TD TG+S+G + + P +++K++ H I +V
Sbjct: 338 YFRPYGQVAKVHILTDRETGKSKGCGVVKLRHPGTVNKILEEPVHVIGKSQV 389
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +1
Query: 232 DHR*GAPCHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 363
D+ GA H A G +E++ + TD NTG+ R F F+ F +P S+
Sbjct: 469 DYERGAINHSNA-GPLENVRIPTDKNTGQQRSFGFVEFSSPVSV 511
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +1
Query: 271 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 444
G+I S+ V TDP G+S+GF F+ F+ PE ++ + + +N K++ ++ A K
Sbjct: 133 GKIVSLKVMTDPE-GKSKGFGFVSFETPEEAEEAV----NVLNGKEIGGRRLWAGRAK 185
Score = 34.7 bits (76), Expect = 0.082
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
F YG I S V D + G S+GF F+ F +PE K +
Sbjct: 232 FSPYGTISSAKVMKD-DKGNSKGFGFVCFSSPEEATKAV 269
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 37.5 bits (83), Expect = 0.012
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
F YG ++++++ TD SRGFA++ + PE +K +
Sbjct: 1177 FSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKAL 1215
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 489 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDVKRA 665
Q++ G + V++P D+T N +GF ++ + + E+ L I G+E+ V+
Sbjct: 1174 QEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQSV 1233
Query: 666 TP 671
P
Sbjct: 1234 LP 1235
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 37.5 bits (83), Expect = 0.012
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 280 ESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
E++N+ TD TGR RGF F+ F + E ++K +
Sbjct: 123 EAVNIITDRETGRPRGFGFVTFGSKEEMEKAI 154
>SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 35.5 bits (78), Expect = 0.047
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = -1
Query: 386 SPAAMTLSIDSGALNTMKANPRDLPVFGSVFTLILSISPYAPK*HGAPYLWSPSSAHQQK 207
SP A++ +D G +A +++P F TL L + P+A G P ++PSS H++
Sbjct: 371 SPDALSKGLDMGWGALSRAGVQEMPAFP---TLRLPLHPFASTGFGTPAFYNPSSYHRE- 426
Query: 206 VFCRHRVLGP 177
+ VLGP
Sbjct: 427 ---YYPVLGP 433
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 35.1 bits (77), Expect = 0.062
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 283 SINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
S+ V TD TGR RGF F+ F + + +DK +
Sbjct: 37 SVKVITDRETGRPRGFGFVTFGSEDEMDKAI 67
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 516 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRATPK 674
+L V++ D+ + +GF F+TF SE ++ + K + G+ + V +A P+
Sbjct: 35 LLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPR 88
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV---MAAGEHTINNKKVDPKKAK 429
F Y ++ + V +D T R RGFAF+ F + ++++ + E + KV+ +++
Sbjct: 250 FSRY-DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQARSR 308
Query: 430 ARHGKIFVGGLSS 468
+ G GG S
Sbjct: 309 EQRGGGRGGGYRS 321
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 34.3 bits (75), Expect = 0.11
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK----- 423
F G I + DP +G ++GFAF F + + ++NK++ P K
Sbjct: 172 FEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAV----KKLDNKEIRPGKRLGVC 227
Query: 424 AKARHGKIFVGGLSSEISDDEIRNFFSEL 510
+ ++FVG + S EI FS++
Sbjct: 228 ISVANSRLFVGSIPKTKSKQEILEEFSKV 256
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 274 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
++ + V TD TGR RGF F+ F + E ++K +
Sbjct: 29 DVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAI 62
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 522 EVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDVKRATPK 674
EV + D KN+ KGF F++F E + + TIGGK+V A K
Sbjct: 541 EVRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARK 592
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 286 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKV 411
+ V DP +S+GF F+ F E K +A + TI K+V
Sbjct: 542 VRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQV 584
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 33.1 bits (72), Expect = 0.25
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 268 YGEIESINVKTDPNTGRSRGFAFIVFKAPES 360
YGEI ++N+ D TG+ +GF F+ ++ S
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRS 32
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEQ 596
G I+ V + DK ++KGFCF+ +E ++
Sbjct: 3 GEIVNVNLVRDKKTGKQKGFCFLCYEDQR 31
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 438
F G + V +P G SRGFAF+ + E +K G+ N ++V+ + +
Sbjct: 226 FSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEK----GQRAHNGRQVEGSNIRVAY 281
Query: 439 G 441
G
Sbjct: 282 G 282
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 33.1 bits (72), Expect = 0.25
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 268 YGEIESINVKTDPNTGRSRGFAFIVFKAPES 360
YGEI ++N+ D TG+ +GF F+ ++ S
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRS 32
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEQ 596
G I+ V + DK ++KGFCF+ +E ++
Sbjct: 3 GEIVNVNLVRDKKTGKQKGFCFLCYEDQR 31
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 375
F YG++ I + D NT SRGFAF+ F + M
Sbjct: 36 FKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAM 74
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 32.7 bits (71), Expect = 0.33
Identities = 27/112 (24%), Positives = 52/112 (46%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 438
F +G++ +++ + G +GFAFI F++ + + V+ KK + K+ +
Sbjct: 108 FSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFNRESKTKK-EEKREPSID 166
Query: 439 GKIFVGGLSSEISDDEIRNFFSELELS*KWRCPLTKQRTKERASVSSHLNLS 594
K + S+ ++ + S+L LS R ++RT SV S+ N S
Sbjct: 167 DKTKIKKRRRSHSESDLES--SKLSLSQSER---KRRRTTSETSVDSNENAS 213
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 489 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITFESEQ 596
+K+ G +L V +P K + KGF FI FES+Q
Sbjct: 105 KKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQ 140
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 381
F YG++ + + D T SRG AFI+F +S +AA
Sbjct: 30 FERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAA 70
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 32.3 bits (70), Expect = 0.43
Identities = 14/75 (18%), Positives = 34/75 (45%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 438
F G +ES+ + D TG +GF +++F++ +++ + +K+ +K +
Sbjct: 76 FTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKMNNAEFKGRKIRVFPSKDKP 135
Query: 439 GKIFVGGLSSEISDD 483
F+ + D+
Sbjct: 136 QTEFISHIQVRFRDN 150
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 677
G + V + D+ KGF ++ FES+ V LK G+++ V + KP
Sbjct: 80 GNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKMNNAEFKGRKIRVFPSKDKP 135
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 32.3 bits (70), Expect = 0.43
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +1
Query: 259 FGAYGEI-ESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTIN 399
F A+G I ++ + D +TG S+GFAFI F + ++ D + A G++ N
Sbjct: 120 FSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCN 169
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 31.9 bits (69), Expect = 0.57
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFI---VFKAPESIDKVMAAGEHTINNKKVD 414
F YGEI++++V D TG +G+A + FK +S + + E N VD
Sbjct: 313 FSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQNISVD 367
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKTPKRTIGGKEVDVKRATP 671
G I +V++P D T ++ +GF F+ FE +E + + + G+ + V A P
Sbjct: 29 GDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLAKP 83
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 357
F +G+I + + D T + RGF F+ F+ E
Sbjct: 25 FIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAE 57
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 31.5 bits (68), Expect = 0.76
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 620
G + +V++ +D + Q KGFCF+T +++ + ++T
Sbjct: 299 GIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQT 335
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 31.5 bits (68), Expect = 0.76
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 363
F +G +E +++ D +GRSRGF F++ ++ + I
Sbjct: 29 FEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQI 62
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 31.5 bits (68), Expect = 0.76
Identities = 11/41 (26%), Positives = 26/41 (63%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 381
F A+G++ ++ +P TG+ +G+ FI ++ +S + +A+
Sbjct: 219 FEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIAS 259
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 360
F +G I I++ DP + +GFAF+ + PE+
Sbjct: 122 FHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEA 155
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR-TIGGKEVDVKRATPKP 677
G ++ + + + KG+ FI +E++Q ND + + +GG+ + V RA P
Sbjct: 223 GKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMNLFDLGGQFLRVGRAITPP 279
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 381
F +G+I V D T S+G AF+ +++ ES+ + +AA
Sbjct: 436 FKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCLAA 476
>SB_41060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 83 NDNFAQDITTDNQLNGNAENGGGDSQDH-NSAEAPGRDDD 199
ND+ DI D+ NGN + G D+ D N E G DDD
Sbjct: 20 NDDDGDDIDDDDG-NGNGNDNGDDNDDDDNDDEGNGDDDD 58
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = +2
Query: 80 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKL--------FVGGLSWE 232
NN+N D +DN + N++N ++ D+N+ R D ++ ++ GL+WE
Sbjct: 613 NNNNNNNDNNSDNNSDNNSDNNSDNNSDNNNDNNSERGADPEIKRGKNPEGWIRGLNWE 671
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 80 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 199
NNDN + + +N N N N ++ D+NS + D
Sbjct: 597 NNDNNSDNNNNNNNNNNNNNNNNDNNSDNNSDNNSDNNSD 636
>SB_2941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 80 NNDNFAQDITTDNQLNGNAE----NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKE 247
+ND D D+++NG + N GGD D + + DDD + G S++ D +
Sbjct: 58 DNDGGDDDDDDDDEVNGGNDDDDFNNGGDCDDDDDDDDDDDDDDDDINKKGASYDDDDDD 117
>SB_28750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 80 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 199
NN+N + +N N N N ++ D NS E DDD
Sbjct: 18 NNNNNNNNNNNNNNNNNNNNNNNNNNNDDNSDEDDDDDDD 57
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 442 KIFVGGLSSEISDDEIRNFFSE 507
K+FVGG+ E DD +R FF++
Sbjct: 11 KLFVGGIPYESGDDALRKFFAQ 32
>SB_46941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 80 NNDNFAQDITTDNQLNGNAE-NGGGDSQDHNS 172
NND+ D T D+ N N + NGGG D+N+
Sbjct: 193 NNDDDDDDDTDDDDHNNNDDDNGGGGDDDNNN 224
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 83 NDNFAQDITTDNQLN-GNAENGGGDSQDHNS 172
+DNF DI+ D LN G A N + ++NS
Sbjct: 335 HDNFNDDISNDGNLNGGGANNNNNKNNNYNS 365
>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 277 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 414
I+ + K+ N G++ G AF+VFK+ K + I ++ ++
Sbjct: 361 IDLLKHKSGKNQGKNTGVAFVVFKSNNDASKALKMDRSYIGHRYIE 406
>SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3)
Length = 189
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 80 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 199
NN+N +I +N N N N ++ ++N+ + DDD
Sbjct: 112 NNNNNNNNINNNNNNNNNNNNNNNNNNNNNNNDDDDDDDD 151
>SB_1073| Best HMM Match : Ribosomal_L12 (HMM E-Value=2.2)
Length = 244
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 77 ANNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 199
A N+ +A+ +T +N N N N ++ ++N+ DDD
Sbjct: 160 AINEKYAKIMTDNNNNNNNNNNNNNNNNNNNNNNNNNNDDD 200
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 277 IESINVKTDPNTGRSRGFAFIVFKAPES 360
+ + V TD TGR RGF F+ +A ++
Sbjct: 107 VVDVRVITDRETGRPRGFGFVTLEAKKT 134
>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
Length = 2865
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 140 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRVILEHTVK*RVLM 292
NGG + D + A R++ +LFV GL E ++ +LR I V V M
Sbjct: 603 NGGKSTDDASDAAYELRNEGVELFVVGLGDENSEAQLREIASVPVIDHVFM 653
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 194 DDRKLFVGGLSWETTDKELRVI 259
DDRKLFVG +S +++LRV+
Sbjct: 212 DDRKLFVGMISKHAKEEDLRVM 233
>SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 80 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 199
++DN D DN NG+ ++ D D + +A DDD
Sbjct: 61 DSDNNYDDNDDDNDDNGDDDDNDDDDDDDDDDDADDDDDD 100
>SB_24568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 86 DNFAQDITTDNQLNGNAENGG-GDSQDHNSAEAPGRDDD 199
D + D D+ + + +N G GD D+ AE G DDD
Sbjct: 821 DYYYDDDDDDDDDDDDGDNDGDGDGDDYGDAENYGEDDD 859
>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
Length = 599
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/30 (30%), Positives = 22/30 (73%)
Frame = +2
Query: 83 NDNFAQDITTDNQLNGNAENGGGDSQDHNS 172
ND+ A D++ ++ + G+ +NGG D+ ++++
Sbjct: 180 NDDSASDVSIEDIIYGDDDNGGDDNDNYDN 209
>SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1924
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 268 MLQNDTELLICGLPAQPTNKKFSVVIASWGLSTVMILRI 152
++QN TE ++ GL T + F V + +W LS + L++
Sbjct: 1631 VVQNPTENIVLGLLEDFTGRNFYVFMDNWFLSINLFLQL 1669
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVF 345
F G++ + + +D N+ RS+G A+I F
Sbjct: 166 FSKVGQVSDVRIISDRNSRRSKGIAYIEF 194
>SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -2
Query: 202 SVVIASWGLSTVMILRITATVLCISIKLV 116
++++ S G++ L ITAT+LC SI L+
Sbjct: 267 TILLESSGVTLPKALHITATILCYSISLL 295
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 259 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 390
F +G + I + + RS+G+AF+ F A + + K+ A H
Sbjct: 118 FEQFGTVNRIRLSRSKKSARSKGYAFVEF-ACDEVAKIAADTMH 160
>SB_7551| Best HMM Match : zf-HIT (HMM E-Value=8.4)
Length = 243
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 617 DSQKNNWWKGGRCEACNTKTRWPRRHRHAK 706
D K+ WW R E C K + R+H+H K
Sbjct: 74 DIVKSVWW-WRRLEKCKPKKKRKRKHKHTK 102
>SB_7529| Best HMM Match : Toxin_29 (HMM E-Value=0.0017)
Length = 691
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 80 NNDNFAQDITTDNQLNGNAENGGGDSQD 163
+++++A D DN +NG+ ++GGGD D
Sbjct: 585 DDEDYAGD--GDNDVNGDGDSGGGDDDD 610
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 510 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 611
G + E ++ DK KG+ FITFES++V + L
Sbjct: 32 GVVKESKIVRDK-HGVSKGYAFITFESQEVADGL 64
>SB_46960| Best HMM Match : Neuromodulin (HMM E-Value=3.6)
Length = 557
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 80 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 199
+N+N +DI N EN GG+S + N + DD+
Sbjct: 147 SNNNEDEDIQEVEDDNEGKENDGGESDEENDDDDEDGDDE 186
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +1
Query: 268 YGEIESINVK---TDPNTGRSRGFAFIVFKAPESIDKVM 375
+GEIE PN G RG+ F+ FK E K +
Sbjct: 410 FGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKAL 448
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 265 AYGEIESINVKTDPNTGRSRGFAF 336
++GE+ + N+ D TG S+G+AF
Sbjct: 695 SFGELRAFNLVKDSATGLSKGYAF 718
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 671 WCCTLHIDLLSTNCSFGSLKQIIYNL 594
WC D+L+T CS GS++ ++ L
Sbjct: 3068 WCLDCRGDILATGCSDGSVEVVVARL 3093
>SB_20263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +2
Query: 80 NNDNFAQDITTDNQLNGN--AENGGGDSQDHN 169
NNDN+ + DN N N NG DS D+N
Sbjct: 90 NNDNYDNNGNNDNNDNYNNYDNNGNNDSNDNN 121
>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
Length = 521
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 77 ANNDNFAQDITTDNQLNGNAENGGGD-SQDHNSAEAPGRDDDRK 205
+N+DN D +T N N N EN D S +NS + DD K
Sbjct: 103 SNSDNSNTDNSTSN--NSNPENSTSDNSNSNNSNQDNSNSDDSK 144
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 77 ANNDNFAQDITTDNQLNGNAENGGGD-SQDHNSAEAPGRDDDRK 205
+N+DN D +T N N N EN D S +NS + DD K
Sbjct: 289 SNSDNSNTDNSTSN--NSNPENSTSDNSNSNNSNQDNSNSDDSK 330
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,795,674
Number of Sequences: 59808
Number of extensions: 476574
Number of successful extensions: 2959
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2748
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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