Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30963
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    27   2.1  
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    27   2.7  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   4.8  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   8.3  

>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 125 AHPPYVCYVTLPGGACFGSFQNCPTKAEARRSAAKIALMNSVF 253
           A+ P  CYV+    A     +   TK EA R  +KI+ + S+F
Sbjct: 148 ANVPVYCYVSAHAAAPGLDPRYIKTKREAEREISKISNLRSIF 190


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 368 IPALGSWCGLLVSPAKDARASATAFSMKWS 279
           I  +GS+ GLL SP     A + AF   WS
Sbjct: 198 ILTMGSFAGLLPSPYLSTYAGSKAFLSNWS 227


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +3

Query: 456 LERVAESDARAAMLAAGSVAHYSARALDDAMREQMAREWATREREGLRPVAEYYARSWRD 635
           L+R+    +RA +L  G+     A      + E+M +  A R+R GL P+    A SW  
Sbjct: 5   LDRILPIASRA-LLCEGNRDWAGAYVSYCKVLEEMKKSSAARDRMGLGPLTGAEACSWNG 63

Query: 636 L 638
           L
Sbjct: 64  L 64


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 140 VCYVTLPGGA-CFGSFQNCPTKAEARRSAAKIALMNSV 250
           +C+ T   G  CF  F+N P   EA ++   + L +S+
Sbjct: 455 LCFRTKGNGPMCFVEFENIPYAMEALKNLQGVCLSSSI 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,858
Number of Sequences: 5004
Number of extensions: 44850
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)