Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30963
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0597 - 24198112-24198462,24199249-24199389,24200322-242005... 30 1.6
12_01_0403 - 3185897-3186931,3187200-3187311,3187425-3187735,318... 30 2.2
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 30 2.2
08_01_0282 + 2299688-2299859,2300314-2300384,2300780-2300861,230... 29 2.8
07_01_0469 - 3552409-3553368 29 2.8
04_01_0607 + 7955026-7955664 29 2.8
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388... 29 3.8
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 29 5.0
06_01_1115 - 9186521-9187000 29 5.0
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 29 5.0
02_01_0304 + 2037718-2037939,2038169-2038384,2038862-2039329,203... 29 5.0
11_01_0671 - 5479240-5479286,5480399-5480588,5480669-5480824,548... 28 6.6
08_02_0292 - 15420378-15421229 28 6.6
04_01_0067 - 673381-673387,675388-678131 28 6.6
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 28 6.6
01_06_0017 + 25592255-25593730 28 6.6
12_02_0742 - 22696478-22696984 28 8.7
07_03_0292 + 16318388-16318756 28 8.7
02_05_0988 - 33340477-33340953 28 8.7
02_02_0252 + 8323087-8323523,8323929-8324019,8324155-8324281,832... 28 8.7
01_05_0544 + 23098921-23098953,23099209-23099272,23099942-231000... 28 8.7
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 28 8.7
>02_04_0597 - 24198112-24198462,24199249-24199389,24200322-24200537,
24200626-24201561,24201655-24201816,24202026-24202304,
24202399-24203171,24206142-24207363
Length = 1359
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/44 (45%), Positives = 23/44 (52%)
Frame = -1
Query: 136 GRMGSRHRLVDDEGAARRAPASCRLHLPKLLEGFHYVHSREDSI 5
G SR R VDDE A A R + K LEG Y+H+ E SI
Sbjct: 1211 GVEASRKR-VDDEFKRFVAEAQTREEIRKSLEGEQYIHTLETSI 1253
>12_01_0403 -
3185897-3186931,3187200-3187311,3187425-3187735,
3188112-3188324,3188834-3189052
Length = 629
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 507 SVAHYSARALDDAMREQMAREWATREREGLRPVAEYYARSWRDLNASFGRRGWRR 671
SV A AL + +A ++ + L+ YY+ WR A F + WRR
Sbjct: 462 SVTEVEAFALRAEDLKYVANQFKRLHSKRLQHAFRYYSHQWRSWGACFVQGAWRR 516
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 591 GLRPVAEYYARSWRDLNASFGRRGWRRASFASLKKNATSSNW 716
G+ V EY AR WRD A RRG ++ A + +T W
Sbjct: 424 GVGAVKEYMARRWRDARAEEERRG---SAVAESPRVSTPKEW 462
>08_01_0282 +
2299688-2299859,2300314-2300384,2300780-2300861,
2300949-2301067,2301338-2301415,2301500-2301619,
2301729-2301788
Length = 233
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 518 LLGSGTRRRDAGTDGARMGHQGA*RSSSGG 607
L G+G+ A +G+ G GA RSSSGG
Sbjct: 3 LWGTGSSAASAAAEGSAAGGDGAARSSSGG 32
>07_01_0469 - 3552409-3553368
Length = 319
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 609 PPPDEDLHAPWWPILAPSVPASRRLVPEPSS 517
PPP AP P AP+VPA+ L P P S
Sbjct: 208 PPPSAAPAAPPVPPAAPAVPAAPALAPVPVS 238
>04_01_0607 + 7955026-7955664
Length = 212
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +3
Query: 459 ERVAESDARAAMLAAGSVAHYSARALDDAMREQMAREWATREREGLRPVAEYYARSWRDL 638
E V + +A A+ A A +A ++ + E++ R W + G R E+ ++
Sbjct: 117 EAVVKREAAMAVKRAKMAADRAAEMAEERVAERLRRRWWRWRQRGRRRSREWRREGGGEV 176
Query: 639 NASFGRRGWRRA 674
A+ R RRA
Sbjct: 177 EAAVERAAARRA 188
>09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,
3881287-3883916
Length = 1163
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +2
Query: 476 RCASGNARG-RKRSALLGSGTR--RRDA-GTDGARMGHQGA 586
R G+ G +RSA GSG+R RDA G DG R+G +GA
Sbjct: 1091 RLVEGSETGLAQRSAADGSGSRLGTRDAGGGDGGRLGARGA 1131
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -3
Query: 446 WNTVISSWNSSIVRPLFASSMNLNAAIPALGSWCGL-LVSPAK--DARASATAFSMKWSD 276
W + + N +R A S+ LN +L S L L+ A + R S+TAF MKW+
Sbjct: 654 WFVLALTHNEESLRIDAAESLFLNPKTSSLPSALELSLLKQAVPLNMRCSSTAFQMKWTS 713
Query: 275 IRRDSCS*IRCSL 237
+ R + +R +L
Sbjct: 714 LFRKFFARVRTAL 726
>06_01_1115 - 9186521-9187000
Length = 159
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 455 TGTGR*ERCASGNARGRKRSALLGSGTRRRDAGTDGARMGHQGA*RSSSGG 607
T G+ E G RG R++ LG R +G DG G G + GG
Sbjct: 50 TVDGKAEEGLQGGGRGGDRTSALGPTPWRLGSGGDGGGSGSGGRAEARGGG 100
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 347 TRTP-ALVSLRLGSCWKRTKVGRCWN 421
T+ P + VSLR+G C R K GRC++
Sbjct: 513 TKLPFSFVSLRIGMCKDRLKKGRCFS 538
>02_01_0304 +
2037718-2037939,2038169-2038384,2038862-2039329,
2039419-2040171
Length = 552
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -3
Query: 596 KTFTLPGGPFSRHLFPHRVV*CPSRVVRYASCREHCRSRIALSDPF 459
K LP +H + R + PS + + C EHC A +D +
Sbjct: 146 KVKALPFKGTGKHKYSFRHIEVPSYPIHFCDCEEHCGPPEAANDEY 191
>11_01_0671 -
5479240-5479286,5480399-5480588,5480669-5480824,
5481005-5481931
Length = 439
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 329 ETRATHTRTPALVSLRLGSCWKR 397
E TH P L++LRL CW R
Sbjct: 212 EHHRTHIYAPNLITLRLDDCWGR 234
>08_02_0292 - 15420378-15421229
Length = 283
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +2
Query: 458 GTGR*ER---CASGNARGRKRSALL-GSGTRRRDAGTDGARMGHQGA*RSSSGG 607
G GR ER A+ GR+R G G RR + T R +G RSS GG
Sbjct: 14 GAGRRERRRGSAAAEPSGRRRELTTSGGGRSRRRSRTRRRRARRRGEERSSGGG 67
>04_01_0067 - 673381-673387,675388-678131
Length = 916
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 561 AREWATREREGLRPVAEYYARSWRDLNASFGRRGWRRASF 680
+R WA G+ PVAE +A+ R L+ + R + SF
Sbjct: 5 SRRWAGAVESGVDPVAEAWAKLLRSLSQAMARLRVQMESF 44
>02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 500 GRKRSALLGSGTRRRDAGTDGARMGHQGA*RSSSGG 607
GR + G G +RD G+ G+R G+ G R GG
Sbjct: 1186 GRGGGSGRGGGGYQRDRGSQGSRGGYGGGSRFQDGG 1221
>01_06_0017 + 25592255-25593730
Length = 491
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 250 IHEHESRRISDHFIEKAVAEARASFAGDTSNPHQDPSAG 366
+HE R +S+H ++ AV ++ +A D + H P G
Sbjct: 110 LHEPFDRYLSEHHVDAAVVDSFFRWAADAAAEHGVPRLG 148
>12_02_0742 - 22696478-22696984
Length = 168
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +2
Query: 128 HPPYVCYVTLPGGACFGSFQNCPTKAEARRSAAKIALMNSVFTSTNLGG 274
HPP T GG C GS + A RR A A +T GG
Sbjct: 47 HPPTTA-TTGCGGVCVGSIRGQQAAAHRRRQAVAAAAGGVAVAATGGGG 94
>07_03_0292 + 16318388-16318756
Length = 122
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = +2
Query: 458 GTGR*ERCASGNARGRKRSALLGSGTRRRDAGTDGARMGHQGA 586
G GR E SG R+ S G G RRR A G R G QG+
Sbjct: 48 GEGRPELHDSGGTGRRQHS---GQGERRRRAAVCGERGGGQGS 87
>02_05_0988 - 33340477-33340953
Length = 158
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 480 ARAAMLAAGSVAHYSARALDDAMREQMAREWATRER-EGLRPVAEYYARSWR 632
A AA AAG V+ R L++ + ++ R A RER E LR + + +WR
Sbjct: 34 AAAAAAAAGHVSVVGRRPLEEVYKVRVERGAAARERAEALRAMETW--STWR 83
>02_02_0252 +
8323087-8323523,8323929-8324019,8324155-8324281,
8324469-8324623
Length = 269
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 169 RSTGERDVADVGRMGSRHRLVDDEGAARR 83
++TG D+A M ++H L+ EGAA R
Sbjct: 241 KATGGADIATAASMQAKHELLACEGAAMR 269
>01_05_0544 +
23098921-23098953,23099209-23099272,23099942-23100084,
23100246-23100719,23100950-23101123,23101230-23101367,
23101489-23101589,23101910-23102183
Length = 466
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 247 RIHEHESRRISDHFIEKAVAEARASFAGDTSNP--HQDP 357
RI+ E I D F++KA A+ S GD NP HQ P
Sbjct: 305 RIYVQEG--IYDAFVKKATEMAKKSVVGDPFNPRVHQGP 341
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 530 PSRVVRYASCREHCRSRIALSDPFQWSSWNTVISSWNSSI 411
P+R R + R H RSR+ L +P + W T+ +W +
Sbjct: 92 PTRRSRLSPARPHRRSRLRLREPSRSCCW-TMTRTWMKQV 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,686,343
Number of Sequences: 37544
Number of extensions: 407724
Number of successful extensions: 1611
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1611
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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