Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30963
(727 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC035727-1|AAH35727.1| 337|Homo sapiens Lix1 homolog (mouse)-li... 131 2e-30
BC036467-1|AAH36467.1| 282|Homo sapiens Lix1 homolog (mouse) pr... 107 5e-23
AK098400-1|BAC05298.1| 282|Homo sapiens protein ( Homo sapiens ... 107 5e-23
U67615-1|AAB41309.1| 3801|Homo sapiens beige protein homolog pro... 30 9.7
AL390765-1|CAI14952.1| 3801|Homo sapiens lysosomal trafficking r... 30 9.7
AL121997-1|CAI18987.1| 3801|Homo sapiens lysosomal trafficking r... 30 9.7
>BC035727-1|AAH35727.1| 337|Homo sapiens Lix1 homolog (mouse)-like
protein.
Length = 337
Score = 131 bits (317), Expect = 2e-30
Identities = 62/85 (72%), Positives = 73/85 (85%)
Frame = +1
Query: 253 HEHESRRISDHFIEKAVAEARASFAGDTSNPHQDPSAGIAAFRFMLEANKGRTMLEFQEL 432
+EH SRRI+D FIEK+V+EA ASF G+ +P+ GI AFRFMLE+NKG++MLEFQEL
Sbjct: 175 NEHPSRRITDEFIEKSVSEALASFNGNREEA-DNPNTGIGAFRFMLESNKGKSMLEFQEL 233
Query: 433 MTVFQLLHWNGSLRAMRERQCSRQE 507
MTVFQLLHWNGSL+AMRERQCSRQE
Sbjct: 234 MTVFQLLHWNGSLKAMRERQCSRQE 258
Score = 124 bits (299), Expect = 3e-28
Identities = 58/77 (75%), Positives = 62/77 (80%)
Frame = +2
Query: 23 VNVVEALQEFWQVKXXXXXXXXXXXLVIYESVPAAHPPYVCYVTLPGGACFGSFQNCPTK 202
VNVVEALQEFWQ+K LV+YE VP+ PPYVCYVTLPGG+CFGSFQ CPTK
Sbjct: 98 VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQFCPTK 157
Query: 203 AEARRSAAKIALMNSVF 253
AEARRSAAKIALMNSVF
Sbjct: 158 AEARRSAAKIALMNSVF 174
Score = 40.7 bits (91), Expect = 0.005
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +3
Query: 510 VAHYSARALDDAMREQMAREWATREREGLRPVAEYYARSWRDLN 641
+AHYS RALDD +R QMA +W +RE+ ++ A + R+L+
Sbjct: 260 LAHYSHRALDDDIRHQMALDWVSREQSVPGALSRELASTERELD 303
>BC036467-1|AAH36467.1| 282|Homo sapiens Lix1 homolog (mouse)
protein.
Length = 282
Score = 107 bits (256), Expect = 5e-23
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +1
Query: 253 HEHESRRISDHFIEKAVAEARASFAGDTSNPHQDPSAGIAAFRFMLEANKGRTMLEFQEL 432
+E SRRI+ FI ++V EA AS +G T + DPS + A+ +MLE+N G+TMLEFQEL
Sbjct: 105 NELPSRRITKEFIMESVQEAVASTSG-TLDDADDPSTSVGAYHYMLESNMGKTMLEFQEL 163
Query: 433 MTVFQLLHWNGSLRAMRERQCSRQE 507
MT+FQLLHWNGSL+A+RE +CSRQE
Sbjct: 164 MTIFQLLHWNGSLKALRETKCSRQE 188
Score = 100 bits (239), Expect = 6e-21
Identities = 45/81 (55%), Positives = 58/81 (71%)
Frame = +2
Query: 11 VLSTVNVVEALQEFWQVKXXXXXXXXXXXLVIYESVPAAHPPYVCYVTLPGGACFGSFQN 190
V +NVV LQEFW+ K +V+YES+PA PP+V YVTLPGG+CFG+FQ
Sbjct: 24 VFKDLNVVSMLQEFWESKQQQKAAFPSEGVVVYESLPAPGPPFVSYVTLPGGSCFGNFQC 83
Query: 191 CPTKAEARRSAAKIALMNSVF 253
C ++AEARR AAK+AL+NS+F
Sbjct: 84 CLSRAEARRDAAKVALINSLF 104
Score = 33.9 bits (74), Expect = 0.60
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 510 VAHYSARALDDAMREQMAREWATREREGLRPVAEYYARSWRDLNASFGRRGWRRASFASL 689
+++YS +LD+ MR MA +W +ER+ V++ + R L + R+ + F
Sbjct: 190 ISYYSQYSLDEKMRSHMALDWIMKERDSPGIVSQELRMALRQLEEA--RKAGQELRFYKE 247
Query: 690 KKNATS 707
KK S
Sbjct: 248 KKEILS 253
>AK098400-1|BAC05298.1| 282|Homo sapiens protein ( Homo sapiens
cDNA FLJ25534 fis, clone CBR08513. ).
Length = 282
Score = 107 bits (256), Expect = 5e-23
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +1
Query: 253 HEHESRRISDHFIEKAVAEARASFAGDTSNPHQDPSAGIAAFRFMLEANKGRTMLEFQEL 432
+E SRRI+ FI ++V EA AS +G T + DPS + A+ +MLE+N G+TMLEFQEL
Sbjct: 105 NELPSRRITKEFIMESVQEAVASTSG-TLDDADDPSTSVGAYHYMLESNMGKTMLEFQEL 163
Query: 433 MTVFQLLHWNGSLRAMRERQCSRQE 507
MT+FQLLHWNGSL+A+RE +CSRQE
Sbjct: 164 MTIFQLLHWNGSLKALRETKCSRQE 188
Score = 100 bits (239), Expect = 6e-21
Identities = 45/81 (55%), Positives = 58/81 (71%)
Frame = +2
Query: 11 VLSTVNVVEALQEFWQVKXXXXXXXXXXXLVIYESVPAAHPPYVCYVTLPGGACFGSFQN 190
V +NVV LQEFW+ K +V+YES+PA PP+V YVTLPGG+CFG+FQ
Sbjct: 24 VFKDLNVVSMLQEFWESKQQQKAAFPSEGVVVYESLPAPGPPFVSYVTLPGGSCFGNFQC 83
Query: 191 CPTKAEARRSAAKIALMNSVF 253
C ++AEARR AAK+AL+NS+F
Sbjct: 84 CLSRAEARRDAAKVALINSLF 104
Score = 33.9 bits (74), Expect = 0.60
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 510 VAHYSARALDDAMREQMAREWATREREGLRPVAEYYARSWRDLNASFGRRGWRRASFASL 689
+++YS +LD+ MR MA +W +ER+ V++ + R L + R+ + F
Sbjct: 190 ISYYSQYSLDEKMRSHMALDWIMKERDSPGIVSQELRMALRQLEEA--RKAGQELRFYKE 247
Query: 690 KKNATS 707
KK S
Sbjct: 248 KKEILS 253
>U67615-1|AAB41309.1| 3801|Homo sapiens beige protein homolog protein.
Length = 3801
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 107 YESVPAAHPPYVCYVTLPGGACFGSFQNCPTKA 205
Y P+A P VC+ + P G FGS Q PT+A
Sbjct: 3472 YVGSPSAPVPVVCF-SQPHGERFGSLQALPTRA 3503
>AL390765-1|CAI14952.1| 3801|Homo sapiens lysosomal trafficking
regulator protein.
Length = 3801
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 107 YESVPAAHPPYVCYVTLPGGACFGSFQNCPTKA 205
Y P+A P VC+ + P G FGS Q PT+A
Sbjct: 3472 YVGSPSAPVPVVCF-SQPHGERFGSLQALPTRA 3503
>AL121997-1|CAI18987.1| 3801|Homo sapiens lysosomal trafficking
regulator protein.
Length = 3801
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 107 YESVPAAHPPYVCYVTLPGGACFGSFQNCPTKA 205
Y P+A P VC+ + P G FGS Q PT+A
Sbjct: 3472 YVGSPSAPVPVVCF-SQPHGERFGSLQALPTRA 3503
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,695,403
Number of Sequences: 237096
Number of extensions: 1896370
Number of successful extensions: 5545
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5542
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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