Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30963
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U41993-1|AAO12433.1|  390|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AL032652-8|CAA21706.1|  277|Caenorhabditis elegans Hypothetical ...    29   4.5  
AC098856-5|AAR12980.1|  263|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical
           protein ZK783.1 protein.
          Length = 2585

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 482 ASGNARGRKRSALLGSGTRRRDAGTDGARMGHQGA*RSSSGGGV 613
           +S  + G+K  A  GS +    +GT     G  GA  SSSG GV
Sbjct: 807 SSATSSGKKSEATSGSSSSSAKSGTGSEASGSSGA-SSSSGSGV 849


>U41993-1|AAO12433.1|  390|Caenorhabditis elegans Hypothetical
           protein F44A2.5b protein.
          Length = 390

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 202 SGSKTQRR*NSINEQRIHEHESRRISDHFIEKAVAEARA 318
           SG   Q+    IN  +    + + +S+H IEKA+ E RA
Sbjct: 147 SGGAHQQYNKRINSSKKENQKKKVMSEHEIEKAITELRA 185


>AL032652-8|CAA21706.1|  277|Caenorhabditis elegans Hypothetical
           protein Y63D3A.10 protein.
          Length = 277

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 96  PSSSTSLCRLPIRPTSATSRSPVERALAVFKTAQLKRKQDAAPL 227
           P  S  L RL +  + A S+ P  R  A     +LKR+QD  PL
Sbjct: 185 PQKSFFLLRLSL--SYALSQEPHSRPTATLAARRLKRRQDTQPL 226


>AC098856-5|AAR12980.1|  263|Caenorhabditis elegans Hypothetical
           protein Y37F4.5 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 401 LFASSMNLNAAIPALGSWCGLLVSPAKDARASA 303
           +  SS+NL++ +P  GSW G   + + D  A+A
Sbjct: 134 IMGSSLNLDSMLPIAGSWMGTQKTRSIDLVATA 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,745,353
Number of Sequences: 27780
Number of extensions: 273511
Number of successful extensions: 753
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)