Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30963
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59660.1 68418.m07480 leucine-rich repeat protein kinase, put... 31 0.59
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel... 29 3.1
At3g62800.2 68416.m07056 double-stranded RNA-binding domain (DsR... 29 3.1
At3g62800.1 68416.m07055 double-stranded RNA-binding domain (DsR... 29 3.1
At3g28660.1 68416.m03577 pentatricopeptide (PPR) repeat-containi... 29 3.1
At2g46450.1 68415.m05780 cyclic nucleotide-regulated ion channel... 29 4.1
At2g30560.1 68415.m03722 glycine-rich protein 29 4.1
At2g23100.1 68415.m02756 DC1 domain-containing protein contains ... 29 4.1
At4g01010.1 68417.m00136 cyclic nucleotide-regulated ion channel... 28 7.2
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 28 7.2
At1g45231.2 68414.m05189 WW domain-containing protein Since this... 27 9.6
>At5g59660.1 68418.m07480 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 842
Score = 31.5 bits (68), Expect = 0.59
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +3
Query: 558 MAREWATREREGLRPVAEYYARSWRDLNASFGRRGWRRASFASLKKNATSSNWPP 722
++R + ++ LR + + Y R+W ASF R GW + + +L+ N +++ PP
Sbjct: 153 LSRTYLSKSGSDLRYMKDVYDRTWVSYGASF-RTGWTQI-YTALEVNNSNNYAPP 205
>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
putative (CNGC18) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 706
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +3
Query: 507 SVAHYSARALDDAMREQMAREWATREREGLRPVAEYYARSWRDLNASFGRRGWRRASFAS 686
+++ A AL + +A ++ + + L+ YY+ WR A F + WRR
Sbjct: 544 ALSEVEAFALSAEDLKFVAHQFKRLQSKKLQHAFRYYSHQWRAWGACFVQSAWRRYKRRK 603
Query: 687 LKK 695
L K
Sbjct: 604 LAK 606
>At3g62800.2 68416.m07056 double-stranded RNA-binding domain
(DsRBD)-containing protein weak similarity to SP|P19525
Interferon-induced, double-stranded RNA-activated
protein kinase (EC 2.7.1.-) {Homo sapiens}; contains
Pfam profile PF00035: Double-stranded RNA binding motif
Length = 355
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 113 SVPAAHPPYVCYVTLPGGACFGSFQNCPTKAEARRSAAKIALMNSVFTSTNLGGYPTISS 292
S P+ P + V G G + TK A SAAK+A M+ ++N G PT+ S
Sbjct: 106 SGPSHAPTFTSTVEFAGKVFSG--EEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPS 163
>At3g62800.1 68416.m07055 double-stranded RNA-binding domain
(DsRBD)-containing protein weak similarity to SP|P19525
Interferon-induced, double-stranded RNA-activated
protein kinase (EC 2.7.1.-) {Homo sapiens}; contains
Pfam profile PF00035: Double-stranded RNA binding motif
Length = 355
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 113 SVPAAHPPYVCYVTLPGGACFGSFQNCPTKAEARRSAAKIALMNSVFTSTNLGGYPTISS 292
S P+ P + V G G + TK A SAAK+A M+ ++N G PT+ S
Sbjct: 106 SGPSHAPTFTSTVEFAGKVFSG--EEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPS 163
>At3g28660.1 68416.m03577 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 504
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/70 (31%), Positives = 29/70 (41%)
Frame = -1
Query: 214 SCFRFSWAVLKTAKARSTGERDVADVGRMGSRHRLVDDEGAARRAPASCRLHLPKLLEGF 35
S F SW L A R + + + H L + A + + LHLP L + F
Sbjct: 5 SSFHQSWKSLILASQRCNTVKQIKSTHSLFIIHGLHRNTYAISKL-LTAFLHLPNLNKHF 63
Query: 34 HYVHSREDSI 5
HY S DSI
Sbjct: 64 HYASSIFDSI 73
>At2g46450.1 68415.m05780 cyclic nucleotide-regulated ion channel,
putative (CNGC12) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc3) GI:4581201 from
[Arabidopsis thaliana]
Length = 636
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 582 EREGLRPVAEYYARSWRDLNASFGRRGWRRASFASLKKNATSSNWP 719
+R+ L+ Y++ WR A F + WR+ L K + N P
Sbjct: 536 QRQKLQRTFRLYSQQWRSWAAFFIQAAWRKHCKRKLSKTRDNENIP 581
>At2g30560.1 68415.m03722 glycine-rich protein
Length = 171
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +2
Query: 485 SGNARGRKRSALLGSGTRRRDAGTDGARMGHQGA*RSSSGGG 610
SG+ G K GSG R G GA+ G G +S GGG
Sbjct: 7 SGSGGGGKGGGGGGSGGGRGGGGGGGAKGGCGGGGKSGGGGG 48
>At2g23100.1 68415.m02756 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 711
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 113 SVPAAHPPYVCYVTLPGGACFGSFQNCPTK 202
SV +HP + Y+ L GAC G C K
Sbjct: 524 SVHESHPNHPIYINLTKGACMGCSNACSRK 553
>At4g01010.1 68417.m00136 cyclic nucleotide-regulated ion channel,
putative (CNGC13) similar to CaM-regulated potassium ion
channel (ACBK1) GI:8515883 from [Arabidopsis thaliana]
Length = 696
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 525 ARALDDAMREQMAREWATREREGLRPVAEYYARSWRDLNASFGRRGWRRASFASLKKNAT 704
A A DD + +A ++ + L+ +Y+ WR ASF + WRR L ++ T
Sbjct: 577 ALAADDL--KLVASQFRRLHSKQLQHTFRFYSVQWRTWGASFIQAAWRRHCRRKLARSLT 634
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from
[Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
profile; contains Pfam PF00569: Zinc finger, ZZ type
domain; identical to histone acetyltransferase HAC4
(GI:14794966) {Arabidopsis thaliana}
Length = 1456
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = -2
Query: 612 TPPPDEDLHAPWWPILAPSVPASRRLVPEPSSXXXXXXXXXXXAHRSQRPVPVEQLEYRH 433
TP P LH P W S P +R +P+ S SQ P QL+ +
Sbjct: 328 TPLPKRQLHHPLWNTNFQSAPNNRDNLPQVSQQLSNHGSRQHRGQHSQNLYP-GQLQNQD 386
Query: 432 QLL 424
+LL
Sbjct: 387 RLL 389
>At1g45231.2 68414.m05189 WW domain-containing protein Since this
genomic sequence region is unfinished, the annotated
gene may be missing a stop codon or start codon
Length = 538
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 200 KAEARRSAAKIALMNSVFTSTNLGGYP 280
K E+RRS AK L+NS +T T + G P
Sbjct: 292 KKESRRSRAKKKLLNS-YTGTEMKGVP 317
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,116
Number of Sequences: 28952
Number of extensions: 267784
Number of successful extensions: 984
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -