Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30962
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    71   1e-13
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   6.3  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 32/54 (59%), Positives = 42/54 (77%)
 Frame = -1

Query: 378 KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAENRWELRTFE*TPA 217
           KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI  FA+   + +     P+
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPS 59



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 26/61 (42%), Positives = 36/61 (59%)
 Frame = -3

Query: 256 KQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTYVPVASI 77
           K M T ++RVD  LNK +W +G+RNVP          R+D++D A  L+T V  V VA+ 
Sbjct: 47  KHMQTKEVRVDPSLNKEVWKRGIRNVPHRLRLRLSRKRSDEDDKA--LYTYVQAVDVANP 104

Query: 76  K 74
           K
Sbjct: 105 K 105


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 30  GVYSWLASTFSVCKPLID 83
           GV  WLAST+S C  +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,146
Number of Sequences: 5004
Number of extensions: 54146
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)