Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30962
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0140 + 12255418-12255512,12257514-12257793 73 3e-13
08_02_1181 - 24985963-24986242,24987109-24987197 71 1e-12
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649 66 2e-11
01_03_0022 + 11724319-11725381,11725476-11725582 29 3.8
07_03_0043 - 12741661-12741816,12741980-12742153,12742870-127429... 28 8.7
05_07_0195 - 28331445-28331641,28331841-28331934,28332019-283320... 28 8.7
05_07_0029 - 27163121-27163818,27163992-27164067,27164184-271658... 28 8.7
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 28 8.7
>06_02_0140 + 12255418-12255512,12257514-12257793
Length = 124
Score = 72.5 bits (170), Expect = 3e-13
Identities = 33/47 (70%), Positives = 39/47 (82%)
Frame = -1
Query: 396 KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAE 256
K +R G + +EVVTREYT+NLHKRLHG FKK+AP AIKEIRKFA+
Sbjct: 4 KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQ 50
Score = 68.1 bits (159), Expect = 7e-12
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Frame = -3
Query: 313 CWI*KACPKSNQRNPKVR*KQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDD 134
C K P + + K K MGT D+RVD +LNK +WS G+R+VP RND+
Sbjct: 32 CTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHIWSSGIRSVPRRVRVRIARRRNDE 91
Query: 133 EDSAHKLFTLVTY--VPVASIKGLQTENVD 50
ED+ +L++LVT VP +KGL T+ V+
Sbjct: 92 EDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121
>08_02_1181 - 24985963-24986242,24987109-24987197
Length = 122
Score = 70.5 bits (165), Expect = 1e-12
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Frame = -3
Query: 313 CWI*KACPKSNQRNPKVR*KQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDD 134
C K P + + K K MGT D+RVD +LNK +WS G+R+VP RND+
Sbjct: 30 CTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSSGIRSVPRRVRVRIARKRNDE 89
Query: 133 EDSAHKLFTLVTY--VPVASIKGLQTENVD 50
ED+ +L++LVT VP +KGL T+ VD
Sbjct: 90 EDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119
Score = 68.5 bits (160), Expect = 5e-12
Identities = 33/46 (71%), Positives = 38/46 (82%), Gaps = 1/46 (2%)
Frame = -1
Query: 390 ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAE 256
E+KG +A E VVTREYT+NLHKRLH FKK+AP AIKEIRKFA+
Sbjct: 3 EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQ 48
>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
Length = 139
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = -3
Query: 301 KACPKSNQRNPKVR*KQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSA 122
K P + + K K MGT DIR+D +LNK +W+ G+R+VP RND+ED+
Sbjct: 51 KKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAK 110
Query: 121 HKLFTLVTY--VPVASIKGLQTENVD 50
+L++LVT +P +KGL T+ V+
Sbjct: 111 EELYSLVTVAEIPAEGLKGLGTKVVE 136
Score = 52.0 bits (119), Expect = 5e-07
Identities = 30/53 (56%), Positives = 34/53 (64%), Gaps = 16/53 (30%)
Frame = -1
Query: 366 NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFAE 256
+EVVTREYT+NLHKRLHG FKK+AP AIKEIRKFA+
Sbjct: 13 DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQ 65
>01_03_0022 + 11724319-11725381,11725476-11725582
Length = 389
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 329 CKLTVYSRVTTSFMADLPFLSPLGLAIVILSFVYRIQLRKALCATQFRC 475
C+ T+Y + S +AD+P L L VI V R + A+ AT + C
Sbjct: 49 CEGTLYPELCLSTLADIPDLHTKSLPDVICGTVNR--TKDAVAATSYNC 95
>07_03_0043 -
12741661-12741816,12741980-12742153,12742870-12742932,
12744107-12744214,12744303-12744418,12745188-12745314,
12746423-12746592,12747409-12747487,12747558-12747669,
12748064-12748154,12748425-12748534,12748536-12748666,
12749557-12749817
Length = 565
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/65 (20%), Positives = 31/65 (47%)
Frame = -2
Query: 725 SEKHSASEADRAERLLPGALRDARHRNNLLRPVWSRRSPHHFHCSIXXXXXYNLIVVLTS 546
SE+ + D+ + +LP A+ D + +L+ + + HF+ + N + ++
Sbjct: 75 SERVAVKRIDKNKMVLPVAVEDVKREVKILKALQGHENVVHFYNAF---EDDNYVYIVMD 131
Query: 545 SSWRD 531
SW++
Sbjct: 132 KSWKN 136
>05_07_0195 -
28331445-28331641,28331841-28331934,28332019-28332099,
28332186-28332234,28332334-28332419,28332513-28332740,
28332819-28332857,28332958-28333047,28333207-28333269,
28333371-28333449,28333539-28333585,28333668-28333730,
28333814-28333864,28333977-28334060,28334162-28334226,
28334559-28334676,28334775-28334825,28335228-28335314,
28335633-28335712,28336676-28336793
Length = 589
Score = 27.9 bits (59), Expect = 8.7
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = +2
Query: 374 DLPFLSP-LGLAIVILSFVYRIQLRKALCATQFRCGLTVCAVIFPPVIFK----A*LRLS 538
++P+L LG+ I ++ F + + +T+F T VIF P K A +RL
Sbjct: 375 NVPYLGICLGMQIAVIEFARSVMKLRGANSTEFDPATTTPCVIFMPEGSKTHMGATMRLG 434
Query: 539 KMTMLIQQLNCSSSISKYYNGNGVD 613
Q C S+ Y N + VD
Sbjct: 435 SRRTFFQANTCKSA-KLYGNASYVD 458
>05_07_0029 -
27163121-27163818,27163992-27164067,27164184-27165896,
27166285-27166364,27166516-27166684
Length = 911
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Frame = -2
Query: 677 PGALRDARHRN-NLL----RPVWSRRSPHH 603
PG +RD RH N N L +PVWSR+ H
Sbjct: 163 PGHIRDGRHDNGNQLDADAQPVWSRKHAAH 192
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -1
Query: 336 NLHKRLHGVGFKKRAPRAIKEIRKFAENRWELR 238
+LH++ V K + ++EI +F +NRW+++
Sbjct: 796 SLHQKFPNVS-KSQLKNKVREISEFVDNRWQVK 827
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,119,274
Number of Sequences: 37544
Number of extensions: 349326
Number of successful extensions: 685
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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