Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30962
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical pr...    89   4e-18
Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical pr...    85   4e-17
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical
           protein W09C5.6a protein.
          Length = 122

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 42/87 (48%), Positives = 55/87 (63%)
 Frame = -3

Query: 301 KACPKSNQRNPKVR*KQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSA 122
           K  P++     K    QM T D+RVDT+LNKF+WSKG++NVP+         RN+DEDSA
Sbjct: 36  KRAPRAIDEIKKFAKIQMKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSA 95

Query: 121 HKLFTLVTYVPVASIKGLQTENVDASQ 41
            KL+TL TYVP  +  GL   NVD+ +
Sbjct: 96  QKLYTLCTYVPCTNFHGLTNVNVDSEE 122



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 32/48 (66%), Positives = 41/48 (85%)
 Frame = -1

Query: 399 PKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAE 256
           PK E+K +S INEVVTREYT+++H R+ G+G KKRAPRAI EI+KFA+
Sbjct: 3   PKNEKKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAK 50


>Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical
           protein W09C5.6b protein.
          Length = 70

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 38/70 (54%), Positives = 49/70 (70%)
 Frame = -3

Query: 250 MGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTYVPVASIKG 71
           M T D+RVDT+LNKF+WSKG++NVP+         RN+DEDSA KL+TL TYVP  +  G
Sbjct: 1   MKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHG 60

Query: 70  LQTENVDASQ 41
           L   NVD+ +
Sbjct: 61  LTNVNVDSEE 70


>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
            protein F10F2.1 protein.
          Length = 2507

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 578  SISKYYNGNGVDSVETKQVEEGYSGD-GRL*ALPAANAQLCR 700
            SI      NG D  E +  EEG   D GR+ A+  ANA + R
Sbjct: 1349 SIKNGIESNGNDGEEEENGEEGQGDDGGRIAAIKVANADMKR 1390


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
            F10F2.1 protein.
          Length = 2507

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 578  SISKYYNGNGVDSVETKQVEEGYSGD-GRL*ALPAANAQLCR 700
            SI      NG D  E +  EEG   D GR+ A+  ANA + R
Sbjct: 1349 SIKNGIESNGNDGEEEENGEEGQGDDGGRIAAIKVANADMKR 1390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,530,499
Number of Sequences: 27780
Number of extensions: 307407
Number of successful extensions: 667
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)