Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30962
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.9  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   5.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 647 NNLLRPVWSRRSPHH 603
           NNLL  V+S   PHH
Sbjct: 402 NNLLNNVYSTPGPHH 416


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 221 GVYSNVRSSHLFSANFRISLIALGARFLNPTP*SRLCKL 337
           G Y  VR     S   R+++ A+  +  +P P   +C L
Sbjct: 551 GKYEWVRVGKYLSGELRLNMSAIQFKLGHPEPPESVCSL 589


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 406 HCYLKFRVPNST*KSFVC 459
           H YLKF  P     SF+C
Sbjct: 104 HEYLKFSYPRMRAPSFIC 121


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 432 RYTKLKITMAKPKG 391
           RY+KLK    KPKG
Sbjct: 26  RYSKLKRNWRKPKG 39


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 554 IQQLNCSSSISKYYNGNGVDSVETKQVEEGYSGDGRL*ALP 676
           IQ+     S+ +Y+  NG + +     E   +  GRL   P
Sbjct: 365 IQENGDQVSVGRYFYPNGTEKMTLSVNESNITWPGRLQTKP 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,087
Number of Sequences: 438
Number of extensions: 3852
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)