Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30961
         (553 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.44 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.44 
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    22   3.1  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 220  RVSQTKPSDLCHYTNGSSND 279
            RVSQ +PS    Y NG +N+
Sbjct: 1432 RVSQARPSVQLRYPNGKANE 1451


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 220  RVSQTKPSDLCHYTNGSSND 279
            RVSQ +PS    Y NG +N+
Sbjct: 1432 RVSQARPSVQLRYPNGKANE 1451


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 267 VFKRYTPSLCVI*YANLSDTLNMRRWLWSYLRC 365
           +F    P L  I    +  TLN RR+L   L+C
Sbjct: 19  IFTCVKPQLTRISDEAIESTLNDRRYLLRQLKC 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,352
Number of Sequences: 336
Number of extensions: 2200
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)