Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30961
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    63   2e-11
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    63   3e-11
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   1.4  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    27   1.8  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    27   1.8  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    26   3.2  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           26   4.2  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   5.6  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   7.4  
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.4  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   7.4  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   7.4  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   9.8  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 32/62 (51%), Positives = 42/62 (67%)
 Frame = +2

Query: 284 SKFVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHIRAKRKREELSNVLAQ 463
           + FVR +VRE  G A YE+  MEL++ S+DKRA K  K+ LGT  RAK K EEL++V+  
Sbjct: 35  TSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQS 94

Query: 464 MR 469
            R
Sbjct: 95  SR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 62.9 bits (146), Expect = 3e-11
 Identities = 32/60 (53%), Positives = 41/60 (68%)
 Frame = +2

Query: 290 FVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHIRAKRKREELSNVLAQMR 469
           FVR +VRE  G A YE+  MEL++ S+DKRA K  K+ LGT  RAK K EEL++V+   R
Sbjct: 37  FVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 432 SVKNLATCSLR*GRQPPRLITITI 503
           SVKNL   SL+    PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 171 VGLRKGHKTTNISAGRKGITDKAIRF-MPLH*WVFKRYTPSLC 296
           +G R  ++ +N   G KG ++KA +F +PL  W F    P+ C
Sbjct: 1   MGPRSSNRRSNAKDGFKG-SNKASKFPLPLAMWDFGHCNPNAC 42


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -1

Query: 139 SQNTECQSQNNLSQC--TPLPSQRLSFSLFY 53
           ++N E +S  +L Q   TPLP Q++S SLF+
Sbjct: 13  TRNMEKESSKDLVQNEDTPLPVQKISMSLFH 43


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 496 MVMSLGGCLPHLSEHVAKFFTLPLGADVCA 407
           +V SL G    L +  A+FFT PL ++VCA
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCA 573


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 209 RWPQGYHRQSHQIYATTLMGLQTIHSKFVRDLVREFVGHAQYEKMAMELL 358
           R+P  +H  + Q   TT   L   H K+   L +EF   A   K+   +L
Sbjct: 144 RFPPFFHNLNEQQQKTTSFFLADDHLKWFTYLTQEFYQFANIPKLPSHVL 193


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 302 LVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLL----GTHIRAKRK 433
           ++RE +G   + K+ +     ++ K ALKF+ R L      H+R +R+
Sbjct: 35  IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 256  SGINLMALSVIPLRPADILVVLWPFRRPTAISKRGAMLKSQNT 128
            S +NL +  +I L   +++V  W  +RP A     A+L+  NT
Sbjct: 1424 SSVNLYSEEIILLIQKNLIVTKWDVKRPAA----AALLEFVNT 1462


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +2

Query: 242 QIYATTLMGLQTIHSKFVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHIR 421
           QI+   L+ +Q I      D + EF+GH +   +  EL      +R L+F    + +++ 
Sbjct: 181 QIFLMGLLRVQNIQHPQTIDELAEFIGHEESSILLHEL------QRYLQFRPLSISSYLY 234

Query: 422 AKR 430
           +KR
Sbjct: 235 SKR 237


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 520 LVYLNLMVMVMSLGGCLPHLSEH 452
           LV+ NL+ +V   GG +P+L  H
Sbjct: 285 LVHENLLTLVGPFGGSVPYLYNH 307


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
 Frame = +1

Query: 304  STRICRTRSI*EDGY---GVT*GVKRQACSEVLEATI 405
            +TR C T+S+ E+G+    V+  +KR+  +++L+A I
Sbjct: 928  ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARI 964


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 317  VGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHIRAK-RKREELSNVLAQMR 469
            + HA      ++ L+VSKDKR        + THI  +  +R  LS V  Q+R
Sbjct: 1120 INHADILSSILDYLQVSKDKRR-------MATHILGQINQRLTLSQVRNQLR 1164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,252
Number of Sequences: 5004
Number of extensions: 38450
Number of successful extensions: 80
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)