Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30961
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...    83   1e-16
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018     83   1e-16
06_02_0016 - 10623796-10625317,10626493-10627541                       29   2.5  
04_04_1042 - 30346132-30346285,30346629-30346759,30346867-303469...    29   2.5  
01_01_0027 - 205450-206029,206706-207276,207408-207836,208438-20...    27   10.0 

>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 42/68 (61%), Positives = 48/68 (70%)
 Frame = +2

Query: 266 GLQTIHSKFVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHIRAKRKREEL 445
           G  T    FVR L+RE VG A YEK   ELLKV KDKRALK  KR LGTH RAK+KREE+
Sbjct: 34  GKSTKRVNFVRGLIREVVGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEM 93

Query: 446 SNVLAQMR 469
           + V+ +MR
Sbjct: 94  AGVIRKMR 101


>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 42/68 (61%), Positives = 48/68 (70%)
 Frame = +2

Query: 266 GLQTIHSKFVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHIRAKRKREEL 445
           G  T    FVR+L+RE  G A YEK   ELLKV KDKRALK  KR LGTH RAK+KREE+
Sbjct: 34  GKSTKRVTFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEM 93

Query: 446 SNVLAQMR 469
           + VL +MR
Sbjct: 94  AGVLRKMR 101


>06_02_0016 - 10623796-10625317,10626493-10627541
          Length = 856

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 136 VISAWLLVLRSQ*ACEKATKQLIYPLAARVSQTKPSDLCHYTNGSSNDT 282
           V+ A+LLV       +   KQL+  L  +   T  SD  + TNGSS+D+
Sbjct: 640 VVIAFLLVQLVYFNIQAVWKQLLVFLNVKKEPTSNSDSANTTNGSSSDS 688


>04_04_1042 -
           30346132-30346285,30346629-30346759,30346867-30346938,
           30347284-30347370,30347479-30347505,30347777-30347869,
           30348470-30348558,30348649-30348727,30349102-30349231,
           30349344-30349464,30349619-30349726,30349837-30350152
          Length = 468

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/30 (46%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
 Frame = +2

Query: 338 KMAMELLKVSKDK-RALKFLKRLLGTHIRA 424
           KM ME ++ S++K +A  FLKR++GT +R+
Sbjct: 214 KMEMERIQGSEEKLKARSFLKRIVGTVVRS 243


>01_01_0027 -
           205450-206029,206706-207276,207408-207836,208438-208525
          Length = 555

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 302 NHAQTWSVSFEDPLV*WHKSDGFVCDTLAAS-GYISCFVAFSQAYCDLKTRSHAEITKHR 126
           N A  ++  + D    W+ +  F  D L A+     C +A +   C L T +HA +T  R
Sbjct: 101 NTASAFAWKWSDDSSSWNDT-AFPADPLRANCSTTGCALATTNDACTLVTNTHAALTAKR 159

Query: 125 MSIS 114
            S S
Sbjct: 160 CSDS 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,182,928
Number of Sequences: 37544
Number of extensions: 254446
Number of successful extensions: 564
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)