Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30961
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)              95   3e-20
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.47 
SB_32728| Best HMM Match : Astacin (HMM E-Value=0)                     29   3.3  

>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
          Length = 100

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 44/62 (70%), Positives = 52/62 (83%)
 Frame = +2

Query: 287 KFVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHIRAKRKREELSNVLAQM 466
           KFVRD+VRE VG A YEK  MELL++ KDKRALKF K+ LGTH+R KRKREE+++VLA M
Sbjct: 32  KFVRDVVREVVGFAPYEKRVMELLRIGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAM 91

Query: 467 RK 472
           RK
Sbjct: 92  RK 93



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/34 (44%), Positives = 25/34 (73%), Gaps = 5/34 (14%)
 Frame = +3

Query: 165 IAVGLRKGHKTT-NIS----AGRKGITDKAIRFM 251
           +AVGL+KGHK T N++    + RKG ++K ++F+
Sbjct: 1   MAVGLQKGHKVTKNVTKPKPSRRKGASNKRVKFV 34


>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = +2

Query: 239 HQIYATTLMGLQTIHSKFVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHI 418
           H  Y     GL+ +  K  R ++ E  GH  Y+K    L KVS+ K A + L    G H 
Sbjct: 80  HGSYKKEYRGLRKVSRKHARRILDETAGHNTYKKEHRGLRKVSR-KHAQRILDGTAG-HC 137

Query: 419 RAKRKREEL 445
             K++   L
Sbjct: 138 SYKKEHRGL 146



 Score = 30.7 bits (66), Expect = 0.83
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 239 HQIYATTLMGLQTIHSKFVRDLVREFVGHAQYEKMAMELLKVSKDK 376
           H  Y     GL+ +  K  + ++ E  GHA Y+K    L KVS+++
Sbjct: 24  HGSYKKEHRGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSREQ 69



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +2

Query: 239 HQIYATTLMGLQTIHSKFVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHI 418
           H  Y     GL+ +  +  + ++ E  GH  Y+K    L KVS+ K A + L    G + 
Sbjct: 52  HASYKKEHRGLRKVSREQAQRIIDETAGHGSYKKEYRGLRKVSR-KHARRILDETAGHNT 110

Query: 419 RAKRKR 436
             K  R
Sbjct: 111 YKKEHR 116


>SB_32728| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 321

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
 Frame = -1

Query: 181 RRPTAISKRGAMLKSQNT----ECQSQNNLSQCTPLPSQR 74
           R+PT I++ GA +  +++    + Q  N L +CT +P+QR
Sbjct: 269 RQPTIIARNGANIGQRDSFSAIDIQQINALYKCTQIPTQR 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,635
Number of Sequences: 59808
Number of extensions: 315764
Number of successful extensions: 779
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)