Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30961
         (553 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.               107   2e-23
BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36 p...   107   2e-23
BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36 p...   107   2e-23
BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36 p...   107   2e-23
AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36 p...   107   2e-23
AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36 p...    61   3e-09
AL358777-2|CAI13998.1|  255|Homo sapiens protein ( cetyl) transf...    29   8.2  

>CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.
          Length = 105

 Score =  107 bits (258), Expect = 2e-23
 Identities = 52/69 (75%), Positives = 59/69 (85%)
 Frame = +2

Query: 266 GLQTIHSKFVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHIRAKRKREEL 445
           G  T H+KFVRD++RE  G A YE+ AMELLKVSKDKRALKF+K+ +GTHIRAKRKREEL
Sbjct: 31  GRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREEL 90

Query: 446 SNVLAQMRK 472
           SNVLA MRK
Sbjct: 91  SNVLAAMRK 99



 Score = 30.3 bits (65), Expect = 4.7
 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 147 MAPRFEIAVGLRKGHKTT-NISAGR 218
           MA R+ +AVGL KGHK T N+S  R
Sbjct: 1   MALRYPMAVGLNKGHKVTKNVSKPR 25


>BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  107 bits (258), Expect = 2e-23
 Identities = 52/69 (75%), Positives = 59/69 (85%)
 Frame = +2

Query: 266 GLQTIHSKFVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHIRAKRKREEL 445
           G  T H+KFVRD++RE  G A YE+ AMELLKVSKDKRALKF+K+ +GTHIRAKRKREEL
Sbjct: 31  GRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREEL 90

Query: 446 SNVLAQMRK 472
           SNVLA MRK
Sbjct: 91  SNVLAAMRK 99



 Score = 30.3 bits (65), Expect = 4.7
 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 147 MAPRFEIAVGLRKGHKTT-NISAGR 218
           MA R+ +AVGL KGHK T N+S  R
Sbjct: 1   MALRYPMAVGLNKGHKVTKNVSKPR 25


>BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  107 bits (258), Expect = 2e-23
 Identities = 52/69 (75%), Positives = 59/69 (85%)
 Frame = +2

Query: 266 GLQTIHSKFVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHIRAKRKREEL 445
           G  T H+KFVRD++RE  G A YE+ AMELLKVSKDKRALKF+K+ +GTHIRAKRKREEL
Sbjct: 31  GRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREEL 90

Query: 446 SNVLAQMRK 472
           SNVLA MRK
Sbjct: 91  SNVLAAMRK 99



 Score = 30.3 bits (65), Expect = 4.7
 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 147 MAPRFEIAVGLRKGHKTT-NISAGR 218
           MA R+ +AVGL KGHK T N+S  R
Sbjct: 1   MALRYPMAVGLNKGHKVTKNVSKPR 25


>BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  107 bits (258), Expect = 2e-23
 Identities = 52/69 (75%), Positives = 59/69 (85%)
 Frame = +2

Query: 266 GLQTIHSKFVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHIRAKRKREEL 445
           G  T H+KFVRD++RE  G A YE+ AMELLKVSKDKRALKF+K+ +GTHIRAKRKREEL
Sbjct: 31  GRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREEL 90

Query: 446 SNVLAQMRK 472
           SNVLA MRK
Sbjct: 91  SNVLAAMRK 99



 Score = 30.3 bits (65), Expect = 4.7
 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 147 MAPRFEIAVGLRKGHKTT-NISAGR 218
           MA R+ +AVGL KGHK T N+S  R
Sbjct: 1   MALRYPMAVGLNKGHKVTKNVSKPR 25


>AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  107 bits (258), Expect = 2e-23
 Identities = 52/69 (75%), Positives = 59/69 (85%)
 Frame = +2

Query: 266 GLQTIHSKFVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHIRAKRKREEL 445
           G  T H+KFVRD++RE  G A YE+ AMELLKVSKDKRALKF+K+ +GTHIRAKRKREEL
Sbjct: 31  GRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREEL 90

Query: 446 SNVLAQMRK 472
           SNVLA MRK
Sbjct: 91  SNVLAAMRK 99



 Score = 30.3 bits (65), Expect = 4.7
 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 147 MAPRFEIAVGLRKGHKTT-NISAGR 218
           MA R+ +AVGL KGHK T N+S  R
Sbjct: 1   MALRYPMAVGLNKGHKVTKNVSKPR 25


>AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36
           protein.
          Length = 32

 Score = 60.9 bits (141), Expect = 3e-09
 Identities = 28/32 (87%), Positives = 31/32 (96%)
 Frame = +2

Query: 356 LKVSKDKRALKFLKRLLGTHIRAKRKREELSN 451
           LKVSKDKRALKF+K+ +GTHIRAKRKREELSN
Sbjct: 1   LKVSKDKRALKFIKKRVGTHIRAKRKREELSN 32


>AL358777-2|CAI13998.1|  255|Homo sapiens protein ( cetyl)
           transferase family  ).).
          Length = 255

 Score = 29.5 bits (63), Expect = 8.2
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +2

Query: 302 LVREFVGHAQYEKMAMELLKVSKD 373
           L REFV  A Y K+A+ELL+ S+D
Sbjct: 216 LTREFVHFALYNKIAIELLQRSQD 239


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,901,579
Number of Sequences: 237096
Number of extensions: 1404546
Number of successful extensions: 2945
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2945
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5477474182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)