Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30961
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.7  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    21   6.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.3  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   8.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 227 HRQSHQIYATTLMGLQTI 280
           H   HQI  +T  GLQTI
Sbjct: 917 HFPHHQIQVSTSAGLQTI 934


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 176 PAKRPQNN*YIRWPQGY 226
           P + P N   I+WPQGY
Sbjct: 38  PGQGPFNP-KIKWPQGY 53


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 73  GAVMGVVCIVRGYFEIDIRC 132
           GA+ G+V  + G  ++ IRC
Sbjct: 54  GAITGLVASLDGALKLRIRC 73


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +1

Query: 205 YPLAARVSQTKPSDLCHYTNGSSNDTL 285
           YP    ++  +PS  C  T    ND +
Sbjct: 218 YPYCYNLTPNQPSAQCEATTMQENDKM 244


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 243 RFMPLH*WVFKRYTPSLC 296
           RF   H W    Y PS C
Sbjct: 505 RFFSFHQWGILVYEPSAC 522


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 191 VAFSQAYCDLKTRSHAEITKHRMSIS 114
           VAFS  +  ++   H E+  H+ S+S
Sbjct: 76  VAFSDLHALVEFIYHGEVNVHQRSLS 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,986
Number of Sequences: 438
Number of extensions: 2530
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)