Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30961
(553 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ... 83 9e-17
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ... 83 9e-17
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A) 83 1e-16
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ... 60 1e-09
At1g08210.1 68414.m00907 aspartyl protease family protein contai... 29 2.1
At5g12860.1 68418.m01476 oxoglutarate/malate translocator, putat... 29 2.7
At1g52320.2 68414.m05905 expressed protein contains Pfam profile... 27 8.3
At1g52320.1 68414.m05904 expressed protein contains Pfam profile... 27 8.3
At1g41855.1 68414.m04833 hypothetical protein 27 8.3
>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
ribosomal protein L36, Arabidopsis thaliana,
EMBL:AC004684
Length = 108
Score = 83.4 bits (197), Expect = 9e-17
Identities = 40/60 (66%), Positives = 47/60 (78%)
Frame = +2
Query: 290 FVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHIRAKRKREELSNVLAQMR 469
F+R+L++E G A YEK ELLKV KDKRALK KR LGTH RAKRKREE+S+VL +MR
Sbjct: 38 FIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97
>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 112
Score = 83.4 bits (197), Expect = 9e-17
Identities = 40/60 (66%), Positives = 47/60 (78%)
Frame = +2
Query: 290 FVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHIRAKRKREELSNVLAQMR 469
F+R+L++E G A YEK ELLKV KDKRALK KR LGTH RAKRKREE+S+VL +MR
Sbjct: 42 FIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
Length = 113
Score = 83.0 bits (196), Expect = 1e-16
Identities = 41/60 (68%), Positives = 46/60 (76%)
Frame = +2
Query: 290 FVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHIRAKRKREELSNVLAQMR 469
F+R L+RE G A YEK ELLKV KDKRALK KR LGTH RAKRKREE+S+VL +MR
Sbjct: 42 FIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 103
Score = 60.1 bits (139), Expect = 1e-09
Identities = 33/60 (55%), Positives = 41/60 (68%)
Frame = +2
Query: 290 FVRDLVREFVGHAQYEKMAMELLKVSKDKRALKFLKRLLGTHIRAKRKREELSNVLAQMR 469
F+R+L++E G A YEK ELLKV+K K LGTH RAKRKREE+S+VL +MR
Sbjct: 42 FIRNLIKEVAGQAPYEKRITELLKVAKRK---------LGTHKRAKRKREEMSSVLRKMR 92
>At1g08210.1 68414.m00907 aspartyl protease family protein contains
Pfam profile PF00026: Eukaryotic aspartyl protease;
similar to CND41, chloroplast nucleoid DNA binding
protein (GI:2541876) {Nicotiana tabacum}
Length = 492
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 212 WPQGYHRQSHQIYATTLMGLQTIHSKFV-RDLVREFVGHAQYE 337
W G+ R SH+ T++G + K V DLVR+ +G A+Y+
Sbjct: 399 WCIGFQRMSHR--RITILGDLVLKDKVVVYDLVRQRIGWAEYD 439
>At5g12860.1 68418.m01476 oxoglutarate/malate translocator, putative
similar to 2-oxoglutarate/malate translocator precursor,
spinach, SWISSPROT:Q41364
Length = 557
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 267 VFKRYTPSLCVI*YANLSDTLNMRRWLWSYLRCQKTSVL*SS 392
+F SLCV +N+ D R W L C +TSV+ SS
Sbjct: 232 IFLPLVKSLCVACGSNVGDGTEHRLGSWLMLTCFQTSVISSS 273
>At1g52320.2 68414.m05905 expressed protein contains Pfam profile:
PF04782 protein of unknown function (DUF632)
Length = 398
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 218 QGYHRQSHQIYATTLMGLQT 277
+ YHRQSHQ+ +L L+T
Sbjct: 334 EAYHRQSHQVREKSLASLRT 353
>At1g52320.1 68414.m05904 expressed protein contains Pfam profile:
PF04782 protein of unknown function (DUF632)
Length = 398
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 218 QGYHRQSHQIYATTLMGLQT 277
+ YHRQSHQ+ +L L+T
Sbjct: 334 EAYHRQSHQVREKSLASLRT 353
>At1g41855.1 68414.m04833 hypothetical protein
Length = 261
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 437 HASSWRGCVCPIVASRTSEHACLLTP*VTP*PSSHIERVRQIRVL-NHAQTWSVSFEDPL 261
H++ W + ++A+ ++ + TP + P I + + L NH S + DPL
Sbjct: 53 HSTPWSSNIGAVLANHSTPWSSNHTPGYSMTPLDRIGKQHFVTPLDNHLTIHSTTLLDPL 112
Query: 260 V*WHKS 243
V +H S
Sbjct: 113 VEYHHS 118
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,580,440
Number of Sequences: 28952
Number of extensions: 203069
Number of successful extensions: 506
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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