Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30960
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ... 70 4e-13
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch... 31 0.12
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 28 1.2
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 27 2.7
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 2.7
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 27 3.5
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18... 26 4.7
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 26 4.7
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.2
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c... 25 8.2
>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 343
Score = 69.7 bits (163), Expect = 4e-13
Identities = 36/86 (41%), Positives = 51/86 (59%)
Frame = +3
Query: 3 KLYPRCGKLNPDGLAALARADDYEQVKAVAEYYAEYSALFEGAGNNVGDKTLEDKFFEHE 182
K+YP G+L P + LARA++ V+ EYS F+ K+L+D F E E
Sbjct: 235 KMYPSFGRLYPFSTSILARAENAGDVENACSLVKEYSDFFD----QNSQKSLDDHFNEKE 290
Query: 183 VSLNVHAFLQQFHFGVFYSYLKLKNR 260
V LN AFLQQFH+G+ Y++LKL+ +
Sbjct: 291 VELNKLAFLQQFHYGIVYAFLKLREQ 316
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +2
Query: 230 FLFLSEIKEQECRNIVWISECVAQKHRAKIDNYIPI 337
+ FL +++EQE RN+ WI+EC++Q R + N +PI
Sbjct: 308 YAFL-KLREQEIRNLTWIAECISQNQRDRALNIVPI 342
>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 31.5 bits (68), Expect = 0.12
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +3
Query: 39 GLAALARADDYEQVKAVAEYYAEYSALFEGAGNNV------GDKTLEDKFFEHEVSLNVH 200
GLAA+A D EQ + + EY+ + E G K++ + +++ L +
Sbjct: 29 GLAAIASKDVDEQSRKLQEYFEFWDRNHENESEEDRARRIDGYKSVVNSYYDLATDLYEY 88
Query: 201 AFLQQFHFGVFY 236
+ Q FHF FY
Sbjct: 89 GWSQSFHFSRFY 100
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -2
Query: 203 SMNIKAYLMFKEFVFQSFVSH---IIASSFKQSRILSIVFSNSLHLFIIISTSQCG 45
+M+I YL+F F F SF + I + SF+ ++L+++ ++ +FI + G
Sbjct: 74 TMSIPFYLIFGIFAFVSFTTQYLGIYSFSFQPFQLLNVIIASLSMVFITLGAFVLG 129
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 572 SLLSCCQAFLKSIATSIFKCLY 507
SLL+C QAFL ++A ++ LY
Sbjct: 322 SLLTCGQAFLVNVAPMVYPLLY 343
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 97 TMLSILLCLKELAIMWETKLWKTNSLNMR*ALMFMLSCNNSILEFS 234
T LS L+ L+EL + LW + + L+ + +CNN I E S
Sbjct: 684 TGLSSLIHLRELKVD-SNHLWSLDGIQHLDGLLKLSACNNRIKELS 728
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 306 CFWATHSLIQTMLRHSCSLISDKNRKLQN 220
CF+ T+SL + +L + +L D+ +LQN
Sbjct: 189 CFFLTNSLFKRLLNNREALSKDEKSELQN 217
>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 693 FSFSFAFNLMFCDLLVIFIIY*CDFLKSVFTLNYRLMTSFK 571
F SF F+ +F L++F++Y L +F + Y ++ K
Sbjct: 13 FFISFTFSSIFFSSLILFLVY-KSVLSKLFFIKYLMLNLTK 52
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 224 WSFLFLSEIKEQECRNIVWISECVAQK-HRAKIDNYIPI 337
W FL + + +I W VA K HR + ++IP+
Sbjct: 257 WMFLIWGVVAIAQALSIPWWLPAVASKEHRKSLSSFIPL 295
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 702 LTYFSFSFAFNLMFCDLLVIFIIY*CDF 619
L + SFSF+F+ +F L IFI+Y F
Sbjct: 124 LFFLSFSFSFSFLFF-LSQIFIVYFSSF 150
>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 133 AIMWETKLWKTNSLNM 180
A WET+LW+T +N+
Sbjct: 245 AYKWETQLWRTVGINL 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,162
Number of Sequences: 5004
Number of extensions: 63598
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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