Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30960
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006611-1|AAK85455.2|  348|Caenorhabditis elegans Vacuolar h at...   145   3e-35
U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso...    29   2.5  
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso...    29   2.5  
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso...    29   2.5  
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        29   4.4  
AL021447-3|CAA16274.1|  459|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AC006611-1|AAK85455.2|  348|Caenorhabditis elegans Vacuolar h
           atpase protein 16 protein.
          Length = 348

 Score =  145 bits (351), Expect = 3e-35
 Identities = 61/86 (70%), Positives = 74/86 (86%)
 Frame = +3

Query: 3   KLYPRCGKLNPDGLAALARADDYEQVKAVAEYYAEYSALFEGAGNNVGDKTLEDKFFEHE 182
           KLYPRCGKL PDGL  L+RADDY+QVK V E+Y++Y  LFEG+GN  G+KTLEDKFFEHE
Sbjct: 236 KLYPRCGKLFPDGLTGLSRADDYDQVKQVCEFYSDYKPLFEGSGNGPGEKTLEDKFFEHE 295

Query: 183 VSLNVHAFLQQFHFGVFYSYLKLKNR 260
           V LNVH++L QFHFGVFY+++KLK +
Sbjct: 296 VKLNVHSYLHQFHFGVFYAFIKLKEQ 321



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 24/39 (61%), Positives = 31/39 (79%)
 Frame = +2

Query: 221 FWSFLFLSEIKEQECRNIVWISECVAQKHRAKIDNYIPI 337
           F  F    ++KEQE RNI+WI+EC++Q+HR KIDNYIPI
Sbjct: 309 FGVFYAFIKLKEQEMRNIIWIAECISQRHRTKIDNYIPI 347


>U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical
           protein T26A8.4 protein.
          Length = 574

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +3

Query: 30  NPDGLAALARADDYEQVKAVAEYYAEYSALFEGAGNNVGDKTLEDKFFEHEVSLNVHAF 206
           NPD +AA    +D  + KA+A+ +  +S+L    GN V D  L  +  +++   N   F
Sbjct: 512 NPDRIAA----NDPRRAKAIAKQFDAFSSLLGAGGNAVSDPRLRAQKEKNDRQQNTMPF 566


>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform a
           protein.
          Length = 4488

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 144 PHYCQLLQTKQNTQHSIQQQPSLVHNHQHEPVRQDHQ 34
           PHY Q+   +Q  QH  QQQ S      H+ + + H+
Sbjct: 151 PHYAQIRPHQQQQQHYQQQQQSPRQEVTHQNLYEQHR 187


>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform d
           protein.
          Length = 4369

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 144 PHYCQLLQTKQNTQHSIQQQPSLVHNHQHEPVRQDHQ 34
           PHY Q+   +Q  QH  QQQ S      H+ + + H+
Sbjct: 151 PHYAQIRPHQQQQQHYQQQQQSPRQEVTHQNLYEQHR 187


>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform c
           protein.
          Length = 4447

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 144 PHYCQLLQTKQNTQHSIQQQPSLVHNHQHEPVRQDHQ 34
           PHY Q+   +Q  QH  QQQ S      H+ + + H+
Sbjct: 151 PHYAQIRPHQQQQQHYQQQQQSPRQEVTHQNLYEQHR 187


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
            F39B2.4b protein.
          Length = 1589

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 138  YCQLLQTKQNTQHSIQQQPSLVHNHQHEP 52
            Y Q LQ  Q  Q  +QQQ    H HQ +P
Sbjct: 1560 YMQQLQQHQQHQQYMQQQQQHHHQHQQQP 1588



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
 Frame = -1

Query: 228  LQNGIVAGKHEH*GLPHVQRICLPKFCL----------PHYCQLLQTKQNTQHSIQQQPS 79
            +Q G+     +H  LPH Q++  P   +            Y  + Q +Q+ QH    Q  
Sbjct: 1518 MQYGMGHHMQQHPHLPHHQQMPAPMHTMNPMMQNMTPQQQYLYMQQLQQHQQHQQYMQQQ 1577

Query: 78   LVHNHQHE 55
              H+HQH+
Sbjct: 1578 QQHHHQHQ 1585


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
            F39B2.4a protein.
          Length = 1587

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 138  YCQLLQTKQNTQHSIQQQPSLVHNHQHEP 52
            Y Q LQ  Q  Q  +QQQ    H HQ +P
Sbjct: 1558 YMQQLQQHQQHQQYMQQQQQHHHQHQQQP 1586



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
 Frame = -1

Query: 228  LQNGIVAGKHEH*GLPHVQRICLPKFCL----------PHYCQLLQTKQNTQHSIQQQPS 79
            +Q G+     +H  LPH Q++  P   +            Y  + Q +Q+ QH    Q  
Sbjct: 1516 MQYGMGHHMQQHPHLPHHQQMPAPMHTMNPMMQNMTPQQQYLYMQQLQQHQQHQQYMQQQ 1575

Query: 78   LVHNHQHE 55
              H+HQH+
Sbjct: 1576 QQHHHQHQ 1583


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 138  YCQLLQTKQNTQHSIQQQPSLVHNHQHEP 52
            Y Q LQ  Q  Q  +QQQ    H HQ +P
Sbjct: 1558 YMQQLQQHQQHQQYMQQQQQHHHQHQQQP 1586



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
 Frame = -1

Query: 228  LQNGIVAGKHEH*GLPHVQRICLPKFCL----------PHYCQLLQTKQNTQHSIQQQPS 79
            +Q G+     +H  LPH Q++  P   +            Y  + Q +Q+ QH    Q  
Sbjct: 1516 MQYGMGHHMQQHPHLPHHQQMPAPMHTMNPMMQNMTPQQQYLYMQQLQQHQQHQQYMQQQ 1575

Query: 78   LVHNHQHE 55
              H+HQH+
Sbjct: 1576 QQHHHQHQ 1583


>AL021447-3|CAA16274.1|  459|Caenorhabditis elegans Hypothetical
           protein F19B2.7 protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 24  KLNPDGLAALARADDYEQVKAVAEYYAEYSALFEGAGNNVGDKTLEDKFFEHEVSLNVH 200
           K+N      +   + YE  + V E  AEY A+ +   NN  +   E    EH + ++ H
Sbjct: 144 KINNTNPTIVNNQEVYECQQIVPEIPAEYPAINQHIDNNQNENIFEYSIGEHFICVDDH 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,692,776
Number of Sequences: 27780
Number of extensions: 362008
Number of successful extensions: 983
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)