Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30960
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28715.1 68416.m03584 H+-transporting two-sector ATPase, puta...    64   1e-10
At3g28710.1 68416.m03583 H+-transporting two-sector ATPase, puta...    64   1e-10
At5g01190.1 68418.m00024 laccase, putative / diphenol oxidase, p...    29   2.3  
At5g58150.1 68418.m07278 leucine-rich repeat transmembrane prote...    29   3.1  
At5g43210.1 68418.m05280 endo/excinuclease amino terminal domain...    29   4.1  

>At3g28715.1 68416.m03584 H+-transporting two-sector ATPase,
           putative similar to SP|P54641 Vacuolar ATP synthase
           subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit)
           (V-ATPase 41 KDa accessory protein) {Dictyostelium
           discoideum}; contains Pfam profile PF01992: ATP synthase
           (C/AC39) subunit
          Length = 351

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
 Frame = +3

Query: 3   KLYPRCGKLNPDGLAALARADDYEQVKAVAEYYAEYSALFEGAGNNVGDKTLEDK-FFEH 179
           KLY   G L P G   LA  +D +QV+ V E Y  Y A+F     + G+  + DK F+E 
Sbjct: 239 KLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKM--SYGESQMLDKAFYEE 296

Query: 180 EVSLNVHAFLQQFHFGVFYSYLKLKNR 260
           EV     AF QQFH+ VF++Y++L+ +
Sbjct: 297 EVRRLCLAFEQQFHYAVFFAYMRLREQ 323



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query: 194 CSCFPATIPFWSFLFLSEIKEQECRNIVWISECVAQKHRAKI-DNYIPIF 340
           C  F     +  F     ++EQE RN++WISECVAQ  +++I D+ + +F
Sbjct: 302 CLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351


>At3g28710.1 68416.m03583 H+-transporting two-sector ATPase,
           putative similar to SP|P54641 Vacuolar ATP synthase
           subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit)
           (V-ATPase 41 KDa accessory protein) {Dictyostelium
           discoideum}; contains Pfam profile PF01992: ATP synthase
           (C/AC39) subunit
          Length = 351

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
 Frame = +3

Query: 3   KLYPRCGKLNPDGLAALARADDYEQVKAVAEYYAEYSALFEGAGNNVGDKTLEDK-FFEH 179
           KLY   G L P G   LA  +D +QV+ V E Y  Y A+F     + G+  + DK F+E 
Sbjct: 239 KLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKM--SYGESQMLDKAFYEE 296

Query: 180 EVSLNVHAFLQQFHFGVFYSYLKLKNR 260
           EV     AF QQFH+ VF++Y++L+ +
Sbjct: 297 EVRRLCLAFEQQFHYAVFFAYMRLREQ 323



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query: 194 CSCFPATIPFWSFLFLSEIKEQECRNIVWISECVAQKHRAKI-DNYIPIF 340
           C  F     +  F     ++EQE RN++WISECVAQ  +++I D+ + +F
Sbjct: 302 CLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351


>At5g01190.1 68418.m00024 laccase, putative / diphenol oxidase,
           putative similar to diphenol oxidase [Nicotiana
           tabacum][GI:1685087]
          Length = 553

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 503 HALISNFSISMSGGTEWWHA 444
           H+ + NF+++   GT WWHA
Sbjct: 107 HSYVYNFTVTGQRGTLWWHA 126


>At5g58150.1 68418.m07278 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 785

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 168 FFEHEVSLNVHAFLQQFHFGVFYSYLKLKNRSAVTLFGSVNAWPRNIVPKST 323
           F +H  SL+ +     +H   F+S ++L N      F S+ +WP  +V  S+
Sbjct: 15  FVKHLTSLDPNT--DAYHLSSFFSAMRLPNSPQAHTFSSLCSWPGVVVCDSS 64


>At5g43210.1 68418.m05280 endo/excinuclease amino terminal
           domain-containing protein contains Pfam domain PF01541:
           Endo/excinuclease amino terminal domain
          Length = 170

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 506 HHALISNFSISMSGGTEWWHACLVAMFICSNQKSSY 399
           H+  I   + + S G  W  AC++  F C +Q SS+
Sbjct: 83  HNGEIRGGAKASSAGRPWLCACIITGFTCLSQASSF 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,346,022
Number of Sequences: 28952
Number of extensions: 317004
Number of successful extensions: 812
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)