Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30959
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    70   4e-13
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch...    31   0.13 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    28   1.2  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    27   2.8  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   2.8  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    27   3.8  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    26   5.0  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    25   8.7  

>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 36/86 (41%), Positives = 51/86 (59%)
 Frame = +3

Query: 3   KLYPRCGKLNPDGLAALARADDYEQVKAVAEYYAEYSALFEGAGNNVGDKTLEDKFFEHE 182
           K+YP  G+L P   + LARA++   V+       EYS  F+        K+L+D F E E
Sbjct: 235 KMYPSFGRLYPFSTSILARAENAGDVENACSLVKEYSDFFD----QNSQKSLDDHFNEKE 290

Query: 183 VSLNVHAFLQQFHFGVFYSYLKLKNR 260
           V LN  AFLQQFH+G+ Y++LKL+ +
Sbjct: 291 VELNKLAFLQQFHYGIVYAFLKLREQ 316



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 16/36 (44%), Positives = 26/36 (72%)
 Frame = +2

Query: 230 FLFLSEIKEQECRNIVWISECVAQKHRAKIDNYIPI 337
           + FL +++EQE RN+ WI+EC++Q  R +  N +PI
Sbjct: 308 YAFL-KLREQEIRNLTWIAECISQNQRDRALNIVPI 342


>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = +3

Query: 39  GLAALARADDYEQVKAVAEYYAEYSALFEGAGNNV------GDKTLEDKFFEHEVSLNVH 200
           GLAA+A  D  EQ + + EY+  +    E            G K++ + +++    L  +
Sbjct: 29  GLAAIASKDVDEQSRKLQEYFEFWDRNHENESEEDRARRIDGYKSVVNSYYDLATDLYEY 88

Query: 201 AFLQQFHFGVFY 236
            + Q FHF  FY
Sbjct: 89  GWSQSFHFSRFY 100


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -3

Query: 203 SMNIKAYLMFKEFVFQSFVSH---IIASSFKQSRILSIVFSNSLHLFIIISTSQCG 45
           +M+I  YL+F  F F SF +    I + SF+  ++L+++ ++   +FI +     G
Sbjct: 74  TMSIPFYLIFGIFAFVSFTTQYLGIYSFSFQPFQLLNVIIASLSMVFITLGAFVLG 129


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 572 SLLSCCQAFLKSIATSIFKCLY 507
           SLL+C QAFL ++A  ++  LY
Sbjct: 322 SLLTCGQAFLVNVAPMVYPLLY 343


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 97  TMLSILLCLKELAIMWETKLWKTNSLNMR*ALMFMLSCNNSILEFS 234
           T LS L+ L+EL +     LW  + +     L+ + +CNN I E S
Sbjct: 684 TGLSSLIHLRELKVD-SNHLWSLDGIQHLDGLLKLSACNNRIKELS 728


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 306 CFWATHSLIQTMLRHSCSLISDKNRKLQN 220
           CF+ T+SL + +L +  +L  D+  +LQN
Sbjct: 189 CFFLTNSLFKRLLNNREALSKDEKSELQN 217


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 224 WSFLFLSEIKEQECRNIVWISECVAQK-HRAKIDNYIPI 337
           W FL    +   +  +I W    VA K HR  + ++IP+
Sbjct: 257 WMFLIWGVVAIAQALSIPWWLPAVASKEHRKSLSSFIPL 295


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 133 AIMWETKLWKTNSLNM 180
           A  WET+LW+T  +N+
Sbjct: 245 AYKWETQLWRTVGINL 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,554
Number of Sequences: 5004
Number of extensions: 64365
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)