Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30959
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0512 - 22852009-22852140,22852686-22852820,22853739-228537...    56   4e-08
08_02_0444 - 17209447-17209491,17210559-17210849,17211655-172116...    29   3.9  
08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406     28   9.1  
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380...    28   9.1  

>01_05_0512 -
           22852009-22852140,22852686-22852820,22853739-22853787,
           22854043-22854128,22854211-22854291,22854394-22854496,
           22854577-22854684,22854799-22854919,22855532-22855712
          Length = 331

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
 Frame = +3

Query: 33  PDGLAALARADDYEQVKAVAEYYAEYSALFEGAGNNVGDKTLEDK-FFEHEVSLNVHAFL 209
           P G   LA  +D +QV+ V E Y  Y A+F  A  + G+  + DK F+E EV     +F 
Sbjct: 229 PYGHEELAVCEDVDQVRGVMEKYPPYQAIF--AKISYGESQMLDKAFYEEEVRRLCLSFE 286

Query: 210 QQFHFGVFYSYLKLKNR 260
           QQFH+ VF++Y++L+ +
Sbjct: 287 QQFHYAVFFAYIRLREQ 303



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 194 CSCFPATIPFWSFLFLSEIKEQECRNIVWISECVAQKHRAKI-DNYIPIF 340
           C  F     +  F     ++EQE RN++WISECVAQ  + ++ D+ + IF
Sbjct: 282 CLSFEQQFHYAVFFAYIRLREQEIRNLMWISECVAQNQKNRVHDSVVFIF 331


>08_02_0444 -
           17209447-17209491,17210559-17210849,17211655-17211672,
           17211798-17211969,17212523-17212630,17212940-17213382
          Length = 358

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 264 HSCSLISDKNRKLQNGIVAGKHEH*GLPHVQRICLPKFC 148
           H+C  + ++  K   G + GKH   G    +  CL K+C
Sbjct: 238 HNCEFVHEQKSKAAEGDIVGKHTK-GCKCKRTECLKKYC 275


>08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406
          Length = 388

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -2

Query: 261 SCSLISDKNRKLQNGIVAGKHEH*GLPHVQRICLPKFCLPHYCQLLQTKQNTQHSIQQQP 82
           S S  S + R+LQ   VAG      +  +Q +C P   LP+     Q ++  Q +I + P
Sbjct: 106 STSSRSGRYRRLQPAAVAGTRRAELIKRLQELCHPANNLPNCSASWQPQRQRQKTIDRIP 165


>01_01_0517 +
           3803740-3806106,3806226-3806312,3806397-3807035,
           3807118-3807282,3807363-3807657,3807739-3807953,
           3808125-3808430,3808539-3808602,3808735-3808974,
           3809150-3809253
          Length = 1493

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 461 TEWWHACLVAMFICSNQKSSYMVPYYV 381
           T WWH  + A +      S+Y+ PY +
Sbjct: 304 TVWWHVAVTAFYALVYNVSTYVGPYLI 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,581,094
Number of Sequences: 37544
Number of extensions: 374954
Number of successful extensions: 963
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)