Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30959
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.3  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 399 ITTFL-IAAYKHGYQASMPPLSATR 470
           +TT L +A    G  AS+PP+S T+
Sbjct: 278 VTTLLTMATQTSGINASLPPVSYTK 302


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 399 ITTFL-IAAYKHGYQASMPPLSATR 470
           +TT L +A    G  AS+PP+S T+
Sbjct: 278 VTTLLTMATQTSGINASLPPVSYTK 302


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/52 (25%), Positives = 21/52 (40%)
 Frame = -2

Query: 189  GLPHVQRICLPKFCLPHYCQLLQTKQNTQHSIQQQPSLVHNHQHEPVRQDHQ 34
            G P+V  I   ++      + LQ +Q     +QQQ       Q +  +Q  Q
Sbjct: 1177 GAPNVPTILPEQYFATSRIRGLQEQQRNAAMVQQQQQQQQQQQQQQQQQQQQ 1228


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 239 LSEIKEQECRNIVWISECVAQKHRAKIDNY 328
           L  + +    NI W +E  A    A ID+Y
Sbjct: 44  LYRVAQPALANITWYNEGQAWNIEANIDSY 73


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 239 LSEIKEQECRNIVWISECVAQKHRAKIDNY 328
           L  + +    NI W +E  A    A ID+Y
Sbjct: 44  LYRVAQPALANITWYNEGQAWNIEANIDSY 73


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 123 QTKQNTQHSIQQQPSLVHNHQHEPVRQD 40
           Q +Q  Q   QQQ       QH P+ ++
Sbjct: 442 QQQQQQQQQQQQQQQQQQQQQHWPMEEE 469


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,322
Number of Sequences: 438
Number of extensions: 4044
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)