Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30958
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    30   0.34 
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    26   5.5  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   9.5  

>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 540 FGLKNDLTKCWQTFVLRSFFDGL 608
           FG   DL  C++ ++L +FFDG+
Sbjct: 466 FGAFKDLLNCFRRYILNNFFDGM 488


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 534 F*FGLKNDLTKC--WQTFVLRSFFDGLFSLC 620
           F FG K+ L     WQ+F+   FFD + + C
Sbjct: 275 FLFGRKSILPSAGFWQSFLAPKFFDAVLAYC 305


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +3

Query: 507 EYTKFE----KSTF*FGLKNDLTKCWQTFVLRSFFDG 605
           EY +FE    +STF F  K DL K    F+L +FF G
Sbjct: 255 EYLEFEFQECRSTFTF--KYDLEKILDDFILLAFFVG 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,713
Number of Sequences: 5004
Number of extensions: 50820
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)