Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30958
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0540 + 4691929-4692014,4692915-4693125,4693756-4693885,469...    27   9.9  

>08_01_0540 +
           4691929-4692014,4692915-4693125,4693756-4693885,
           4695422-4696072,4696179-4696395,4697040-4697111,
           4697167-4697257,4697367-4698363,4698914-4699044,
           4699584-4699802,4700110-4700805,4700912-4701121,
           4701606-4701710
          Length = 1271

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/50 (22%), Positives = 27/50 (54%)
 Frame = +1

Query: 205 KQRLVLFSKQII*VSDVSLCYLVLLIVKAIFVLLCILPMYVCVYINCKYL 354
           + R++   ++ +    +  C  + L+++AI +L  I    +C+ + C+YL
Sbjct: 402 ENRIIDSDERAVYQEALQACVPLFLVIEAILILSRIKGKMICLRVFCQYL 451


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,701,409
Number of Sequences: 37544
Number of extensions: 236316
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)