Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30958
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12248| Best HMM Match : ATP_bind_3 (HMM E-Value=6.4)                32   0.47 
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_55251| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_12248| Best HMM Match : ATP_bind_3 (HMM E-Value=6.4)
          Length = 172

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -1

Query: 267 ITQTYVAHLNDLFGEED*SLFSSQLANKLSRY 172
           I+QT+ +H++ LFG  +   F+S L NK +R+
Sbjct: 97  ISQTFFSHVSKLFGPFEIDRFASSLTNKCARF 128


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +3

Query: 201  MKTKTSPLLQTNH-LSERRKSVLFSS--SNS*GHFCVAVHFTYVR 326
            +KTK  PL    H + +  K++L S+  S+  G FC A  +TY+R
Sbjct: 1022 VKTKYEPLRANGHKIPKMIKTILLSTTYSDMRGCFCQAFQYTYIR 1066


>SB_55251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 631 SY*EHKENKPSKKLLKTKVCQHFVKSFFNPNQKVDFSNFVYSK 503
           +Y EH +N PS   L T++ Q  +++  N     D+  F Y K
Sbjct: 153 TYIEHAQNSPSATELLTQIPQSLIQALVN-RYSDDYELFSYKK 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,344,130
Number of Sequences: 59808
Number of extensions: 318968
Number of successful extensions: 531
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)