Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30958
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z70750-3|CAA94738.1|  374|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z35641-4|CAA84708.1|  497|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z29443-13|CAA82579.1|  497|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical
           protein T15D6.9 protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 465 KICTAVP*VILFFFEYTKFEKST 533
           KIC  V  + LFFF+  KFE+S+
Sbjct: 10  KICCLVFIIFLFFFQKAKFERSS 32


>Z70750-3|CAA94738.1|  374|Caenorhabditis elegans Hypothetical
           protein C50F4.3 protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 356 FRYLQFI*THTYIGKMHSNTKMA 288
           FR+ QF+ TH  +GKM+   K A
Sbjct: 66  FRFQQFVATHNRVGKMNKAAKKA 88


>Z35641-4|CAA84708.1|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.1 protein.
          Length = 497

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 162 VRRDIETICLLTVMKTKTSPLLQTNHLSERR--KSVLFSSSNS*GHFCVAVHFTYVRMCL 335
           +  ++E +  L  ++   +PL +   L+E    K +L        + C+AV +T V  CL
Sbjct: 220 INSELENLSSLPYVENVRTPLAERESLTESALIKKILGIMRRKKSNLCLAVDYTTVEQCL 279


>Z29443-13|CAA82579.1|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.1 protein.
          Length = 497

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 162 VRRDIETICLLTVMKTKTSPLLQTNHLSERR--KSVLFSSSNS*GHFCVAVHFTYVRMCL 335
           +  ++E +  L  ++   +PL +   L+E    K +L        + C+AV +T V  CL
Sbjct: 220 INSELENLSSLPYVENVRTPLAERESLTESALIKKILGIMRRKKSNLCLAVDYTTVEQCL 279


>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
            F22E10.2 protein.
          Length = 1324

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +3

Query: 135  DFLGSVLFHVRRDIETICLLTVMKTKTSPLLQTNHLSERRKSVLFSSSNS*GHFCVAVHF 314
            D  G +   +  +++TI LLT  +T+       N   +R+++ L  S     ++C++ +F
Sbjct: 941  DDAGKIAIEIIENVKTIQLLT--RTRRFLNSYENESKKRKRTELRKSVYEAVNYCISQNF 998

Query: 315  TYVRMC 332
             Y   C
Sbjct: 999  MYYMSC 1004


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,577,772
Number of Sequences: 27780
Number of extensions: 270146
Number of successful extensions: 610
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)