Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30958
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   4.5  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   4.5  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   4.5  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   4.5  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   6.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   6.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   6.0  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 72  YRYNNNITKLSTYFNIH 22
           Y YNNN      Y+NI+
Sbjct: 97  YNYNNNNYNKKLYYNIN 113


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 72  YRYNNNITKLSTYFNIH 22
           Y YNNN      Y+NI+
Sbjct: 97  YNYNNNNYNKKLYYNIN 113


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 72  YRYNNNITKLSTYFNIH 22
           Y YNNN      Y+NI+
Sbjct: 97  YNYNNNNYNKKLYYNIN 113


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 72  YRYNNNITKLSTYFNIH 22
           Y YNNN      Y+NI+
Sbjct: 97  YNYNNNNYNKKLYYNIN 113


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 72  YRYNNNITKLSTYFNIHNTKIPF 4
           Y YNNN    +  +N +  K+ +
Sbjct: 92  YNYNNNYNNYNNNYNTNYKKLQY 114


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 66  YNNNITKLSTYFNIHN 19
           YNNN      Y+NI N
Sbjct: 314 YNNNYNSKKLYYNIIN 329


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 66  YNNNITKLSTYFNIHN 19
           YNNN      Y+NI N
Sbjct: 325 YNNNYNSKKLYYNIIN 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,607
Number of Sequences: 438
Number of extensions: 3707
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)