Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30957
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   2.7  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    26   6.1  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   8.1  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -3

Query: 405 SNSLSVFFVLFA*NW--QIFYGLFTNSNVVILAQVKLGFYC---LFG*SRKTVKKLAMN 244
           S S+  FF+L       Q+ YGL+TNS  +I   + + F C   L G    T+ K+ +N
Sbjct: 347 SRSIFYFFLLNVSYMFVQVIYGLWTNSLGLISDAIHMAFDCIAILVGLVATTLAKMPLN 405


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 441 YRDKCSNKLSCNNFEK*SQRSFVGIFSQIHQNTDGELANE 560
           Y  +  NKL   NFEK S+   + +  ++  +T   LANE
Sbjct: 427 YLGQLFNKLGSLNFEKPSEDRHIALGDEMDSSTLISLANE 466


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +3

Query: 492 SQRSFVGIFSQIHQNTDGELANEIVRERCIKFLSSK 599
           S  S  GIF     N  GEL  E V E   K + SK
Sbjct: 3   SNLSAKGIFQHASANASGELFQEPVTEDLEKVMQSK 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,149
Number of Sequences: 5004
Number of extensions: 56979
Number of successful extensions: 189
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)