Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30957
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0628 + 12365109-12365150,12366315-12366411,12366489-123665... 60 2e-09
11_03_0110 + 10106214-10106327,10106404-10106493,10106598-101067... 33 0.23
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 33 0.30
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 32 0.52
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320... 29 2.8
11_06_0133 + 20443871-20445122,20445642-20446625,20446776-20447155 29 3.7
05_01_0414 + 3262886-3262957,3264517-3264597,3265115-3265214,326... 29 3.7
07_03_0522 - 19021915-19022649,19022725-19023012,19023091-190235... 28 6.4
07_01_0456 - 3461827-3462261,3462542-3462670,3462777-3462897,346... 28 6.4
01_03_0151 - 13229861-13230347,13230442-13230540,13230701-132309... 28 8.5
>02_02_0628 +
12365109-12365150,12366315-12366411,12366489-12366554,
12367884-12367963,12368051-12368125,12368232-12368381,
12369816-12369881,12370141-12370206,12370653-12370763,
12370917-12371003,12371087-12371193,12372141-12372255,
12372472-12372537,12373521-12373615,12373700-12373880
Length = 467
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/72 (41%), Positives = 49/72 (68%)
Frame = +1
Query: 292 IEAQFDLCEDDDVAIRKQAIKDLPVLCKEHKEHTQRIADILAQLLQSEDSTEINVVTNSL 471
+EA FDL + +++A R QAI+ P+L K+ E +IADIL QLL SE++ E + V +L
Sbjct: 1 MEAMFDLVDMEELATRIQAIRGFPLLAKD-AEFVSKIADILGQLLASEENVERDAVHKAL 59
Query: 472 VTILKSDPKGAL 507
+++++ D K +L
Sbjct: 60 MSLIRQDVKSSL 71
>11_03_0110 +
10106214-10106327,10106404-10106493,10106598-10106795,
10106909-10107064,10107271-10107321,10107415-10107555,
10107643-10108014
Length = 373
Score = 33.1 bits (72), Expect = 0.23
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +3
Query: 447 DKCSNKLSCNNFEK*SQRSFVGIFSQIHQNTDGELANEIVRERCIKFLSSKIQQLGREII 626
DK L C F + S+++ GI + +G+ I+R + IKF+ + ++G EI+
Sbjct: 207 DKSCINLRCAGFVQMSKKAIPGIIIRPVSTVNGK--QYIIRVKIIKFMGDWVLKVGEEIV 264
Query: 627 NKEAEELIYH 656
+L+ H
Sbjct: 265 GYWPSKLLTH 274
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/68 (22%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Frame = +1
Query: 286 QAIEAQFDLCEDDDVAIRKQAI-KDLPVLCKEHKEHTQRI--ADILAQLLQSEDSTEINV 456
+++EA+ ++D +++++Q++ +L + +EHKEH +RI +L ++ E + E++
Sbjct: 974 ESLEAKLSSLQED-ISLKEQSLLSELENIFQEHKEHEERIDRVHLLLNKIEKEKTVELSN 1032
Query: 457 VTNSLVTI 480
+ ++++
Sbjct: 1033 LEREVISL 1040
>07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 31.9 bits (69), Expect = 0.52
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Frame = +1
Query: 265 SFPTLSEQAIEAQFDLCEDDDVAIRKQAIKDLPVLC--KEHKEHTQRIADILAQLLQSED 438
S P + + IE + +D V++RK+AIK + LC + + T+ +I++++ E
Sbjct: 795 SHPDVGLKYIEKVAERIKDTGVSVRKRAIKIIRDLCASNPNTDTTRAFVEIISRVNDEES 854
Query: 439 STEINV-VTNSLV-TILKSDP 495
S ++ V VT +V + KS P
Sbjct: 855 SVQLLVTVTWQIVFHVKKSKP 875
>05_05_0136 -
22631260-22631325,22631735-22631821,22631898-22632026,
22632122-22632190,22632271-22632351,22632598-22632702,
22632786-22633016,22633098-22634272,22634391-22634457,
22636705-22637778,22638119-22638274,22638827-22638985,
22639062-22639220,22639306-22639422,22639502-22639612,
22639690-22640358
Length = 1484
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +1
Query: 271 PTLSEQAIEAQFDLCEDDDVAIRKQAIKDLPVLCKE-HKEHTQRIAD---ILAQLLQSED 438
P L I A + +I++ A+ CK+ K+ +Q + D +L LLQSED
Sbjct: 238 PCLQAGMITAVLTYIDFFSASIQRVAVSAAANACKKVPKDCSQFVMDSVPVLCNLLQSED 297
Query: 439 STEINVVTNSLVTILKS 489
+ V + L+ I+ S
Sbjct: 298 KMVVEKVASCLINIVDS 314
>11_06_0133 + 20443871-20445122,20445642-20446625,20446776-20447155
Length = 871
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +3
Query: 441 YRDKCSNKLSCNNFEK*SQRSFVGIFSQIHQNTDGELANEIVRERCIKFLSSKIQQLGRE 620
Y D SNKLS + Q S + +F+ H N G + N I + LS ++ L
Sbjct: 225 YLDLASNKLSGSIPSSLGQLSSLSLFNLGHNNLSGLIPNSIWNISSLTVLSVQVNMLSGT 284
Query: 621 I 623
I
Sbjct: 285 I 285
>05_01_0414 +
3262886-3262957,3264517-3264597,3265115-3265214,
3265473-3265522,3265581-3265671,3266636-3266715,
3266940-3267005,3267761-3267860,3267934-3268011,
3268165-3268232,3268305-3268373,3268485-3268562,
3269561-3269631,3270632-3270709,3270808-3270913,
3271475-3271579,3272256-3272387,3272464-3272571,
3272655-3272764,3272868-3272963,3273155-3273617
Length = 733
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 391 TQRIADILAQLLQSEDSTEINVVTNSLVTILKSDP 495
++ + DI++ +LQS+D ++ T+ LV L DP
Sbjct: 339 SEGVFDIMSDVLQSQDKVLVSAGTDILVYFLNQDP 373
>07_03_0522 -
19021915-19022649,19022725-19023012,19023091-19023548,
19023939-19024329,19024422-19024668,19024742-19024815,
19024905-19024961
Length = 749
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = -1
Query: 287 CSDKVGKLLKNSQ*IEMPNVSLCQIPLRLRVFPSTLSRAVKFHLSRQLKYRNSYIISLYY 108
CSD + K L + ++ N +VFP+T+ R K+H+ LK ++ ++Y
Sbjct: 239 CSDDMQKTLNVLKDLQKRNNCPSMAAAIRKVFPNTIHRVCKWHV---LKKAKEFMGNIYS 295
Query: 107 HQPSF 93
+ SF
Sbjct: 296 KRRSF 300
>07_01_0456 -
3461827-3462261,3462542-3462670,3462777-3462897,
3463004-3463086,3463087-3463124,3463219-3464153,
3464407-3464655,3464738-3465195,3465793-3465885,
3466402-3466650
Length = 929
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 425 NSWANISAIL*VCSLCSLHKTGKSFMACLRIATS 324
+SW +S +CS C LH+ + + A R++ S
Sbjct: 380 SSWKGLSPRDLLCSFCRLHRLAEPYFAVNRVSAS 413
>01_03_0151 -
13229861-13230347,13230442-13230540,13230701-13230918,
13231210-13231317,13231366-13231518,13232962-13233015,
13233276-13233374,13234458-13234551,13234638-13234715,
13237696-13237766,13238321-13238416,13238505-13238582,
13238683-13238751,13238830-13238897,13239038-13239115,
13239190-13239289,13240002-13240061,13240488-13240579,
13241730-13241779,13241870-13241954,13242035-13242134,
13242933-13243013,13244827-13244907
Length = 832
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 400 IADILAQLLQSEDSTEINVVTNSLVTILKSDP 495
+ DI++ +LQS+D ++ T+ L+ L DP
Sbjct: 377 VFDIISDVLQSQDRKIVSAGTDVLILFLNQDP 408
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,170,337
Number of Sequences: 37544
Number of extensions: 300432
Number of successful extensions: 785
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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