Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30957
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   4e-16
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              34   0.13 
SB_58305| Best HMM Match : Band_41 (HMM E-Value=4.8e-08)               31   1.2  
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               30   1.6  
SB_46415| Best HMM Match : Vicilin_N (HMM E-Value=2.8)                 30   2.1  
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)                  30   2.1  
SB_785| Best HMM Match : hATC (HMM E-Value=0.13)                       28   8.6  

>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 41/75 (54%), Positives = 47/75 (62%)
 Frame = +1

Query: 208 KGI*QRETFGISIHCEFFNSFPTLSEQAIEAQFDLCEDDDVAIRKQAIKDLPVLCKEHKE 387
           KG    +    S    FF  FP L E AI+A  DLCED+D  +RKQAIK LP LCK + E
Sbjct: 164 KGTLGEKKLASSFITRFFKYFPKLQEHAIDAMLDLCEDEDNLLRKQAIKGLPELCKANVE 223

Query: 388 HTQRIADILAQLLQS 432
           H  RIAD+L QLLQS
Sbjct: 224 HLPRIADVLTQLLQS 238



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/42 (52%), Positives = 25/42 (59%)
 Frame = +2

Query: 146 AAAKDEISQHEKEYLEILAAVKGSDKEKRLASQFIASFLTVF 271
           +A   E  QH  EY  ILAAVKG+  EK+LAS FI  F   F
Sbjct: 143 SALTGEGVQHSDEYSAILAAVKGTLGEKKLASSFITRFFKYF 184


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +2

Query: 95  KMAGDNIEKLYKNYDILAAAKDEISQHEKEYLEILAAVKGSDKEKRLASQFIAS 256
           K A D  ++L +  D L   K++I + EK   E+ +A   +DKEKR   Q + S
Sbjct: 596 KRAADAEDELQQTEDELNRLKNDIQEKEKRISELESAFDAADKEKRDLEQQVLS 649


>SB_58305| Best HMM Match : Band_41 (HMM E-Value=4.8e-08)
          Length = 275

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +2

Query: 107 DNIEKLYKNYDILAAAKDEISQHEKEYLEILAAVKGS----DKEKRLASQ 244
           +NI+K  K  D++ A  + ++  EKEY  +L   KG     D +K +  Q
Sbjct: 45  ENIQKTAKGIDLMVAVAEHLNLDEKEYFGLLYDHKGEKYWLDPQKEIKKQ 94


>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 422

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -1

Query: 539 CVLMNL*EDTNKAPLGSLFKIVTREFVTTFISVESSDCNS 420
           CV++    DT+  P+GSL K++   ++   + ++S+ C+S
Sbjct: 267 CVVIRF--DTSNKPMGSLLKVLINNWLAKLLFMKSTKCDS 304


>SB_46415| Best HMM Match : Vicilin_N (HMM E-Value=2.8)
          Length = 222

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +3

Query: 534 NTDGELANEIVRERCIKFLSSKIQQLGREIINKEAEEL 647
           N + ++    +RE+  + LSSKI +LG EI  K+ E+L
Sbjct: 65  NQNIQVMENSIREKYNEELSSKILKLGEEIAQKDREKL 102


>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
          Length = 873

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +3

Query: 534 NTDGELANEIVRERCIKFLSSKIQQLGREIINKEAEEL 647
           N + ++    +RE+  + LSSKI +LG EI  K+ E+L
Sbjct: 716 NQNIQVMENSIREKYNEELSSKILKLGEEIAQKDREKL 753


>SB_785| Best HMM Match : hATC (HMM E-Value=0.13)
          Length = 205

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +1

Query: 403 ADILAQLLQSEDSTEINVVTNSLVTILKSDPKGALLVSSHKFIRTQMVN*QMKLLEKDVS 582
           AD LAQ+L    S +  V  NSL+T ++     A +   +       +  Q K   +   
Sbjct: 48  ADDLAQVLNQCLSVDYGVKANSLLTAMRDWAIAAAIAEENLAQNVAALEQQAKACVQPAI 107

Query: 583 SFYLLKFN 606
            ++L KFN
Sbjct: 108 DWFLRKFN 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,609,655
Number of Sequences: 59808
Number of extensions: 372202
Number of successful extensions: 987
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)