Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30957
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    29   4.4  
AF125463-6|AAD12865.1|  301|Caenorhabditis elegans Hypothetical ...    29   4.4  
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ...    28   7.6  

>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical
           protein ZK430.1 protein.
          Length = 1650

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 540 DGELANEIVRERCIKFLSSKIQQLGREIINKEAEELI 650
           D E AN++  E  + F+ S +++   E +NK+ E+L+
Sbjct: 63  DTEFANDLFSEERVDFVRSMLEKGANEELNKQIEKLL 99


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 89  HKKMAGDNI--EKLYKNYDILAAAKDEISQHEKEY 187
           H+K A +N+  +KLYK  + L A  D+IS +E+ +
Sbjct: 827 HRKNAIENLLTKKLYKTKESLTARVDDISDNERRH 861


>AF125463-6|AAD12865.1|  301|Caenorhabditis elegans Hypothetical
           protein Y49F6C.3 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 561 IVRERCIKFLSSKIQQLGRE 620
           +V E+C++FLS K ++LGR+
Sbjct: 228 VVIEKCVEFLSDKSEKLGRD 247


>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
           protein Y54E10A.11 protein.
          Length = 1446

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 576 CIKFLSSKIQQLGREIINKEAEELIYHRMQKNFR-GCCC 689
           C+KFL  ++QQL  E+   E   +    +QK    GCCC
Sbjct: 821 CLKFLDEELQQLRIEL---EKRVIKSEEIQKLINDGCCC 856


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,363,549
Number of Sequences: 27780
Number of extensions: 315337
Number of successful extensions: 875
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)