Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30957
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    26   0.41 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.2  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           22   5.0  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   8.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 360 QIFYGLFTNSNVVILAQVKLGFYCLFG*SRKTVKKLAMN*DAKRFSLS 217
           QI  G+ + + V  +  +K+  YCLFG S  T  ++     A +  +S
Sbjct: 516 QIRVGVHSGAVVAGIVGLKMPRYCLFGDSVNTASRMEATSQAMQIHIS 563


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 525 FVRRYQQSSFGITF 484
           F+RRY QS+ G+TF
Sbjct: 72  FLRRYGQSAVGLTF 85


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 83  KGHKKMAGDNIEKLYK 130
           K H+K+ GDNI+ + K
Sbjct: 17  KRHRKVLGDNIQGITK 32


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 342 TSHKRFASFMQRAQRTH 392
           TSHKR++   +R Q+++
Sbjct: 267 TSHKRYSRSREREQKSY 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,265
Number of Sequences: 438
Number of extensions: 4013
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)