Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30957
(713 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g34040.2 68415.m04168 apoptosis inhibitory 5 (API5) family pr... 76 2e-14
At2g34040.1 68415.m04167 apoptosis inhibitory 5 (API5) family pr... 76 2e-14
At1g29030.1 68414.m03553 apoptosis inhibitory 5 (API5) family pr... 66 3e-11
At3g19516.1 68416.m02474 hypothetical protein 45 6e-05
At1g23935.1 68414.m03020 apoptosis inhibitory protein 5 (API5)-r... 32 0.33
At5g15540.1 68418.m01819 expressed protein low similarity to DNA... 31 0.57
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ... 31 1.0
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s... 30 1.3
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 30 1.8
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 29 3.1
At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger) fa... 29 3.1
At5g66920.1 68418.m08435 multi-copper oxidase type I family prot... 29 4.0
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 28 5.3
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-... 28 5.3
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 28 5.3
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 28 7.1
At1g55030.1 68414.m06285 F-box family protein contains F-box dom... 27 9.3
At1g27570.1 68414.m03360 phosphatidylinositol 3- and 4-kinase fa... 27 9.3
>At2g34040.2 68415.m04168 apoptosis inhibitory 5 (API5) family
protein contains Pfam domain PF05918 Apoptosis
inhibitory protein 5 (API5)
Length = 442
Score = 76.2 bits (179), Expect = 2e-14
Identities = 32/83 (38%), Positives = 54/83 (65%)
Frame = +1
Query: 256 FFNSFPTLSEQAIEAQFDLCEDDDVAIRKQAIKDLPVLCKEHKEHTQRIADILAQLLQSE 435
+F FP+LS +A +A D +D D+ +R QAI+ LP+ CK+ + +I D+L QLL +E
Sbjct: 59 YFKFFPSLSTEAFDAHMDCIDDGDLGVRVQAIRGLPLFCKDTPDILSKIVDVLVQLLNTE 118
Query: 436 DSTEINVVTNSLVTILKSDPKGA 504
+ E + V +L+++L+ DPK +
Sbjct: 119 EPVERDAVHKALMSLLRQDPKAS 141
>At2g34040.1 68415.m04167 apoptosis inhibitory 5 (API5) family
protein contains Pfam domain PF05918 Apoptosis
inhibitory protein 5 (API5)
Length = 553
Score = 76.2 bits (179), Expect = 2e-14
Identities = 32/83 (38%), Positives = 54/83 (65%)
Frame = +1
Query: 256 FFNSFPTLSEQAIEAQFDLCEDDDVAIRKQAIKDLPVLCKEHKEHTQRIADILAQLLQSE 435
+F FP+LS +A +A D +D D+ +R QAI+ LP+ CK+ + +I D+L QLL +E
Sbjct: 59 YFKFFPSLSTEAFDAHMDCIDDGDLGVRVQAIRGLPLFCKDTPDILSKIVDVLVQLLNTE 118
Query: 436 DSTEINVVTNSLVTILKSDPKGA 504
+ E + V +L+++L+ DPK +
Sbjct: 119 EPVERDAVHKALMSLLRQDPKAS 141
>At1g29030.1 68414.m03553 apoptosis inhibitory 5 (API5) family
protein contains Pfam profile PF05918: Apoptosis
inhibitory protein 5 (API5)
Length = 556
Score = 65.7 bits (153), Expect = 3e-11
Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 1/160 (0%)
Frame = +1
Query: 235 GISIHCEFFNSFPTLSEQAIEAQFDLCEDDDVAIRKQAIKDLPVLCKEHKEHTQRIADIL 414
G + +F F +L+ +A +A D+ ++ +V +R QAI+ LP+ CK+ + +I D+L
Sbjct: 52 GAQLIPRYFKFFTSLATEAFDAYLDIFDEVEVGVRVQAIRGLPLFCKDTPDFISKIIDVL 111
Query: 415 AQLLQSEDSTEINVVTNSLVTILKSDPKGALLVSSHKFIRTQMVN*QMKLLEKDVSSFYL 594
Q L +E+ E + V +L+++ + D K +L T + Q++ EK +
Sbjct: 112 VQCLNTEEFVERDAVHKALMSLFRQDTKASLTALFKHTEATLSTDEQIR--EKVLHFIRD 169
Query: 595 LKFNN*EEK*STKKLRNSFITE-CKKILEDVVAEEFEHIM 711
F E ++ IT+ KK L DV EEF M
Sbjct: 170 KVFPLKGELLKPQQEMERHITDLIKKSLGDVTGEEFNMFM 209
>At3g19516.1 68416.m02474 hypothetical protein
Length = 143
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 220 QRETFGISIHCEFFNSFPTLSEQAIEAQFDLCEDDDV--AIRKQAIKDLPVLCKEHKEHT 393
+ + G + +F + + S QA +A D+ E DV +R QAI+ LP+ CK+ E
Sbjct: 36 ETKELGADLIPRYFQFYTSHSNQAFDAYKDIIEAVDVNLTVRVQAIRKLPLFCKDAPELV 95
Query: 394 QRIADILAQLL 426
+I D+L Q L
Sbjct: 96 SKIIDVLVQCL 106
>At1g23935.1 68414.m03020 apoptosis inhibitory protein 5
(API5)-related contains weak hit to Pfam profile
PF05918: Apoptosis inhibitory protein 5 (API5)
Length = 660
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +1
Query: 346 AIKDLPVLCKEHKEHTQRIADILAQLLQSEDSTEINVVTNSLVTILKSDPKGAL 507
+I D+ ++CK E +I D+L + L +E E + V + ++ D + +L
Sbjct: 26 SICDIELICKHQPELISKIIDVLVEYLNTEKPVECDAVQEVFMAMVHVDKEASL 79
>At5g15540.1 68418.m01819 expressed protein low similarity to DNA
repair and meiosis protein Rad9 [Coprinus cinereus]
GI:1353390, SP|Q09725 Sister chromatid cohesion protein
mis4 {Schizosaccharomyces pombe}
Length = 1755
Score = 31.5 bits (68), Expect = 0.57
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +1
Query: 265 SFPTLSEQAIEAQFDLCEDDDVAIRKQAIKDLPVLCKEH---KEHTQRIADILAQLLQSE 435
S P + + E + +D V++RK+AIK + +C + E T A+IL+++ E
Sbjct: 845 SHPDVGIKYFEKVAERIKDTGVSVRKRAIKIIRDMCTSNPNFSEFTSACAEILSRISDDE 904
Query: 436 DSTEINVVTNSLVTILKSDPKG 501
S + ++V + +P G
Sbjct: 905 SSVQ-DLVCKTFYEFWFEEPPG 925
>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
contains weak similarity to Swiss-Prot:P10366 ATP
phosphoribosyltransferase [Escherichia coli]
Length = 1402
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +1
Query: 226 ETFGISIHCEFFNSFPTLSEQAIEAQFDLCEDDDVAIRKQAIKDLPVLCKEHKEHTQRIA 405
+TFG+++ +N+F + F E+D + + Q + LPV E R
Sbjct: 1190 QTFGVALKVNGYNNFRVVHSFYRSKYFLTLEEDGTSQKSQ--QSLPVNYLERAVGEHRSK 1247
Query: 406 DILAQLLQSEDSTEINVVTNSL--VTIL 483
DI+A + +V NS+ VTIL
Sbjct: 1248 DIIASSYSTSQDMREHVAGNSVHKVTIL 1275
>At4g31900.1 68417.m04533 chromatin remodeling factor, putative strong
similarity to chromatin remodeling factor CHD3 (PICKLE)
[Arabidopsis thaliana] GI:6478518; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1202
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +1
Query: 271 PTLSEQAIEAQFDLCEDDDVAIRKQAIKDLPV-LCKEHKEHTQRIADILAQLLQS-EDST 444
P +S+ + ED+++ ++ A KDL + + K +RI D + + ++ ED+
Sbjct: 1022 PAVSKHGYGRWVAIVEDEEIGFQEVACKDLNIPFPPDTKSARKRICDHVGKRVKKMEDAI 1081
Query: 445 EINVVTNSLVTILKSDPKGALLVSSHK 525
+ L K++ KG V + K
Sbjct: 1082 KYEYAEKILAEQAKAETKGTSFVDAEK 1108
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 386 SLCSLHKTGKSFMACLRIATSSSSHKSNWASIACSDKVGK 267
++ SLH+T K +A + A +SS KS W + D K
Sbjct: 470 TMWSLHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGAK 509
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 574 DVSSFYLLKFNN*EEK*STKKLRNSFITECKKI 672
D S FY+LKF+ + + TKK N I+E K I
Sbjct: 139 DESRFYMLKFHRRDREVITKKYLNHVISEGKTI 171
>At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 312
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 238 ISIHCEFFNSFPTLSEQAIEAQFD--LCEDDDVAIRKQAIKDLPVL 369
ISI+C+ + F + E+++ Q + + DD IRK+ +PVL
Sbjct: 85 ISIYCDHYQIFELVMERSVSEQENILMLMDDVQRIRKRLTSSVPVL 130
>At5g66920.1 68418.m08435 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 546
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/55 (29%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Frame = +1
Query: 388 HTQRIADIL-AQLLQSE-DSTEINVVTNSLVTI-LKSDPKGALLVSSHKFIRTQM 543
HT ++ ++ + ++Q++ DS +I+V + V + L PK +V+S +FIR+++
Sbjct: 239 HTMKVVEVEGSHVIQTDYDSLDIHVGQSLAVLVTLNQSPKDYYIVASTRFIRSKL 293
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +1
Query: 316 EDDDVAIRKQAIKDLPVLCKEHKEHTQRIADILAQLLQSEDSTEINVVTNSLVTILKSDP 495
E +DV + A+K +L + Q I+ +L SED T ++ L I K+D
Sbjct: 27 EGNDVEAKVDAMKKAIMLLLNGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELIEKTDS 86
Query: 496 KGALL 510
KG +L
Sbjct: 87 KGKVL 91
>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 971
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +1
Query: 316 EDDDVAIRKQAIKDLPVLCKEHKEHTQRIADILAQLLQSEDSTEINVVTNSLVTILKSDP 495
E +DV + A+K +L + Q I+ +L SED T ++ L I K+D
Sbjct: 50 EGNDVEAKVDAMKKAIMLLLNGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELIEKTDS 109
Query: 496 KGALL 510
KG +L
Sbjct: 110 KGKVL 114
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 385 EHTQRIADILAQLLQSEDSTEINVVTNSLVTILKSDP 495
+ Q IAD + L SE+ ++ +V V+++KSDP
Sbjct: 209 KEAQVIADDVFSLFVSEEVDKVELVYTKFVSLVKSDP 245
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +1
Query: 226 ETFGISIHCEFFNSFPTLSEQAIEA---QFDLCEDDDVAIRKQAIKDLPV 366
E+ GIS +S PTL ++ + Q +L +DDV +A+ D+P+
Sbjct: 647 ESVGISDCFSVTHSVPTLQKEDAKKVLNQLNLFSEDDVDSAAEALNDMPI 696
>At1g55030.1 68414.m06285 F-box family protein contains F-box domain
Pfam:PF00646
Length = 422
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 232 TFLFVRSLYGCEYFQVLFLVL 170
TF F RSLY CE + L L+L
Sbjct: 120 TFTFPRSLYHCETLETLELIL 140
>At1g27570.1 68414.m03360 phosphatidylinositol 3- and 4-kinase
family protein contains Pfam profile PF00454:
Phosphatidylinositol 3- and 4-kinase
Length = 649
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/73 (21%), Positives = 32/73 (43%)
Frame = +1
Query: 271 PTLSEQAIEAQFDLCEDDDVAIRKQAIKDLPVLCKEHKEHTQRIADILAQLLQSEDSTEI 450
P+LS + +LC +V +R+ I+ + + EH+ + +L L+ D T
Sbjct: 45 PSLSAEIFPYLRELCLSPEVLVRRSLIEIIEEVGLRMLEHSYVLVSVLIHLVGDNDPTVA 104
Query: 451 NVVTNSLVTILKS 489
++ T +S
Sbjct: 105 EKSISTGTTFFRS 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,014,588
Number of Sequences: 28952
Number of extensions: 272589
Number of successful extensions: 838
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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