Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30955X
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 130 1e-31
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 130 1e-31
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 130 1e-31
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 36 0.004
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 28 0.83
SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz... 26 4.4
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 4.4
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 7.7
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 130 bits (314), Expect = 1e-31
Identities = 57/82 (69%), Positives = 68/82 (82%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D
Sbjct: 82 YTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVD 141
Query: 443 AKRTRVQLPSGAKKVLPSSNRG 508
+TRV+LPSGAKKV+PSS RG
Sbjct: 142 TGKTRVKLPSGAKKVVPSSARG 163
Score = 116 bits (280), Expect = 2e-27
Identities = 53/83 (63%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FR+PY ++T E F+A + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
Score = 41.9 bits (94), Expect = 6e-05
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGR 567
+VGIVAGGGRIDKP+LKAGR
Sbjct: 164 VVGIVAGGGRIDKPLLKAGR 183
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 130 bits (314), Expect = 1e-31
Identities = 57/82 (69%), Positives = 68/82 (82%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D
Sbjct: 82 YTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVD 141
Query: 443 AKRTRVQLPSGAKKVLPSSNRG 508
+TRV+LPSGAKKV+PSS RG
Sbjct: 142 TGKTRVKLPSGAKKVVPSSARG 163
Score = 116 bits (280), Expect = 2e-27
Identities = 53/83 (63%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FR+PY ++T E F+A + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
Score = 41.9 bits (94), Expect = 6e-05
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGR 567
+VGIVAGGGRIDKP+LKAGR
Sbjct: 164 VVGIVAGGGRIDKPLLKAGR 183
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 130 bits (314), Expect = 1e-31
Identities = 57/82 (69%), Positives = 68/82 (82%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D
Sbjct: 82 YTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVD 141
Query: 443 AKRTRVQLPSGAKKVLPSSNRG 508
+TRV+LPSGAKKV+PSS RG
Sbjct: 142 TGKTRVKLPSGAKKVVPSSARG 163
Score = 116 bits (280), Expect = 2e-27
Identities = 53/83 (63%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FR+PY ++T E F+A + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
Score = 41.9 bits (94), Expect = 6e-05
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGR 567
+VGIVAGGGRIDKP+LKAGR
Sbjct: 164 VVGIVAGGGRIDKPLLKAGR 183
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 35.9 bits (79), Expect = 0.004
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = -2
Query: 549 RFVNTSTSSNNTDQ-PLLLDGRTFLAPDGSCTLVRLASGLCPITVAKF 409
RF+N +T+S++T Q PLLLD + S +V +ASG+ P+ KF
Sbjct: 120 RFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKF 167
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 28.3 bits (60), Expect = 0.83
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -2
Query: 561 SFQNRFVNTSTSSNNTDQPLLLDGRTFLAPDGSCTLV----RLASGLCPITVAKFPEARA 394
SF+ + NT+T N + + LDGR +P G V L + L + + P
Sbjct: 37 SFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDRLPSTSV 96
Query: 393 RRPLSPIFS 367
R+ PI S
Sbjct: 97 RQHNLPITS 105
>SPAC3A12.19 |||mitochondrial ribosomal protein subunit
L27|Schizosaccharomyces pombe|chr 1|||Manual
Length = 93
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 489 RTFLAPDGSCTLVRLASGLCPITVAKFPE 403
RTF+ P G C L+ S T +PE
Sbjct: 49 RTFVPPSGDCELLPFVSRRIQATKGTYPE 77
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 387 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 289
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 40 QRKGAGSVFVSHTKKRKGAPKLRSLD 117
+R+G+ +HTK+ K APK D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,716
Number of Sequences: 5004
Number of extensions: 51881
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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