Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30955X
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      126   1e-29
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   2.0  
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777...    29   3.4  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    29   3.4  
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713...    27   7.9  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  126 bits (304), Expect = 1e-29
 Identities = 57/83 (68%), Positives = 69/83 (83%)
 Frame = +1

Query: 19  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
           V FR P+++K +KELF+A + ++
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMY 83



 Score =  122 bits (295), Expect = 2e-28
 Identities = 51/81 (62%), Positives = 68/81 (83%)
 Frame = +2

Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
           YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +GDRG  ARASG++A VI HNPD
Sbjct: 83  YTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPD 142

Query: 443 AKRTRVQLPSGAKKVLPSSNR 505
              +R++LPSGAKK++PSS R
Sbjct: 143 NGTSRIKLPSGAKKIVPSSCR 163



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +1

Query: 508 LVGIVAGGGRIDKPILKAG 564
           ++G VAGGGR +KP+LKAG
Sbjct: 165 MIGQVAGGGRTEKPMLKAG 183


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 403 LWKLRHCDWT 432
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>11_06_0325 +
           22376195-22377001,22377136-22377525,22377638-22377778,
           22377888-22378067,22378268-22378447,22378536-22378637,
           22378768-22378896,22379318-22379422,22379528-22379623
          Length = 709

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = +2

Query: 365 EEKMGDRGRLARASGNFATVIGHNPDAKRTRVQLPSGAKKVLPSSNRGWSVLLLEVDVLT 544
           EEK+ +   L    G    +IG N   K T ++L  G +K      +G  VLL E +VL 
Sbjct: 445 EEKLFNNANLIVERGEKIAIIGPNGCGKSTLLKLILGMEK-----TQGGEVLLGEHNVLP 499

Query: 545 NLF 553
           N F
Sbjct: 500 NYF 502


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 434 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 345
           C    W++   H+P  L H  +  +C  WY
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102


>06_01_0926 -
           7139220-7139318,7139394-7139478,7139573-7139643,
           7139996-7140076,7140805-7140895,7141242-7141330,
           7141749-7141802,7141906-7142085,7142175-7142237,
           7142575-7142705,7142807-7142900,7143343-7143684,
           7143957-7144348,7145010-7148487,7149101-7149187,
           7149324-7149367,7149495-7149591,7150429-7150572
          Length = 1873

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +3

Query: 180 RCTFGCCTLPRSIQVQDKEGALHCSEGSTQANLFIVE 290
           RCT G CTL  S  V   EG L+C    +Q  LF+V+
Sbjct: 138 RCTHGGCTLSPSNNV-THEGKLYCKTHHSQ--LFMVK 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,769,452
Number of Sequences: 37544
Number of extensions: 362806
Number of successful extensions: 1010
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)