Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30955X
(568 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 141 4e-34
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 138 4e-33
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 38 0.008
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 29 2.6
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2) 28 6.1
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 27 8.1
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 8.1
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 141 bits (341), Expect = 4e-34
Identities = 64/83 (77%), Positives = 72/83 (86%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FRDPY++K RKELF+A + ++
Sbjct: 61 VVFRDPYRYKLRKELFVATEGMY 83
Score = 138 bits (333), Expect = 4e-33
Identities = 60/81 (74%), Positives = 71/81 (87%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN +
Sbjct: 83 YTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVE 142
Query: 443 AKRTRVQLPSGAKKVLPSSNR 505
KRTRV+LPSG KKV+PSSNR
Sbjct: 143 KKRTRVKLPSGIKKVIPSSNR 163
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGR 567
LVGIVAGGGRIDKP+LKAGR
Sbjct: 165 LVGIVAGGGRIDKPMLKAGR 184
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 138 bits (333), Expect = 4e-33
Identities = 60/81 (74%), Positives = 71/81 (87%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN +
Sbjct: 41 YTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVE 100
Query: 443 AKRTRVQLPSGAKKVLPSSNR 505
KRTRV+LPSG KKV+PSSNR
Sbjct: 101 KKRTRVKLPSGIKKVIPSSNR 121
Score = 71.3 bits (167), Expect = 5e-13
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +1
Query: 145 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPKALH 267
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A + ++
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMY 41
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +2
Query: 296 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVQLPSG 475
A L+ G+ P+ +P GT+V N+E G +LARA+G A +I + V+LPS
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167
Query: 476 AKKVLPS 496
+K + S
Sbjct: 168 VEKEVSS 174
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 567 PSSFQNRFVNT--STSSNNTDQPLLLDGRTFLAPDGSCT 457
PSS QN F + + ++ T L+LD TFL PDGS T
Sbjct: 122 PSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159
>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 451 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 278
T SI ++ + + + GTC+ + FK+ H + H + H ++N C + ++
Sbjct: 76 THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135
Query: 277 KLACV 263
CV
Sbjct: 136 NQRCV 140
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 28.3 bits (60), Expect = 4.6
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Frame = -2
Query: 372 FSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*S----LRSNEEL---LPCLELVW 214
F+S L T +P+ P G+TF T +V F +NW + + + +++EL L LE +W
Sbjct: 1067 FNSELVTSLPT---PPGLTFTTYKVVFLE--SNWRIGNTSGRVATDKELVRVLSSLEYLW 1121
Query: 213 IAEVYNSQRCTS--TRVMD 163
I + + S TR+MD
Sbjct: 1122 IRGRWTNLTDPSLKTRLMD 1140
>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 338 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVQLPSGAKKVLPSSNRGWS 514
P G I+ + +GD+ R +GN T A + +PS L + +R WS
Sbjct: 218 PNGRILPEIPNHVGDKHEKKR-NGNAKTNEADRIGADSSSTAIPSSCTSTLSNHSRAWS 275
>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
Length = 466
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 338 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVQLPSGAKKVLPSSNRGWS 514
P G I+ + +GD+ R +GN T A + +PS L + +R WS
Sbjct: 332 PNGRILPEIPNHVGDKHEKKR-NGNAKTNEADRIGADSSSTAIPSSCTSTLSNHSRAWS 389
>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 223 TCMDRGSVQQPKVHLYQGHGLY 158
T D G +Q P HLY+ HG Y
Sbjct: 515 TVTDIGDLQYPVFHLYKEHGWY 536
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 311 GNVMPVGAMPEGTIVCNLEEKMGDRGRLAR-ASGNFATVIG 430
G+ PV +P G +C + +G R AR G F ++ G
Sbjct: 737 GHSKPVDGLPRGDAICGCPKAIGRRHARARLLEGRFLSISG 777
>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 136 IHDVQRNLKSEV*ERLSSSSCEKRKLNRHPYAEHVLHD 23
I +V + + + R++SS C KRKL R E+ + D
Sbjct: 470 IQEVVKRERKKQRNRIASSKCRKRKLEREARLENRVKD 507
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 27.5 bits (58), Expect = 8.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 189 FGCCTLPRSIQVQDK 233
FGCC +P ++ QDK
Sbjct: 182 FGCCVMPNAVHCQDK 196
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Frame = -1
Query: 532 HLQQQYRPASVA*WQNLLGSRR*LYSCTLSIRIVSN----HSGEVSRGTCQTTSITHFLF 365
H+ +Y WQ +G R LY C R+ N HSG + I H F
Sbjct: 2643 HINCRYLRIHPRTWQTYIGMRVELYGCRRGERLWDNAVGMHSGRIKTRPNYCVIIRHRQF 2702
Query: 364 KIAHNGTLRHSSNRHHISN 308
H LR R+ + +
Sbjct: 2703 -APHQARLRRHKYRNGLKS 2720
>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4085
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 560 AFKIGLSIRPPPATIPTSLCCLMAE 486
AF L RPPP I S+CC E
Sbjct: 3659 AFTEDLVYRPPPPNISLSVCCTYIE 3683
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,047,144
Number of Sequences: 59808
Number of extensions: 408924
Number of successful extensions: 1078
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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