Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30955X
(568 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 134 4e-32
AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical ... 34 0.062
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 31 0.44
AC084154-12|AAK29876.1| 1137|Caenorhabditis elegans Hypothetical... 29 2.3
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical p... 28 4.1
Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical p... 28 5.4
AF273807-1|AAG15156.1| 416|Caenorhabditis elegans nuclear recep... 28 5.4
AF016675-1|AAF02172.2| 416|Caenorhabditis elegans Nuclear hormo... 28 5.4
L11247-6|AAA28005.2| 367|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF220526-1|AAF43009.1| 332|Caenorhabditis elegans DNAse II homo... 27 9.4
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 134 bits (324), Expect = 4e-32
Identities = 60/83 (72%), Positives = 68/83 (81%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1 MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
+ FRDPYK+KT K +A + +H
Sbjct: 61 IAFRDPYKYKTVKTTVVAAEGMH 83
Score = 130 bits (314), Expect = 7e-31
Identities = 53/81 (65%), Positives = 70/81 (86%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
+TGQF++CG KA +++GN++PVG +PEGT +CN+E K GDRG +ARASGN+ATVI HNPD
Sbjct: 83 HTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPD 142
Query: 443 AKRTRVQLPSGAKKVLPSSNR 505
K+TR++LPSGAKKV+ S NR
Sbjct: 143 TKKTRIRLPSGAKKVVQSVNR 163
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGR 567
++G+VAGGGR DKP+LKAGR
Sbjct: 165 MIGLVAGGGRTDKPLLKAGR 184
>AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical
protein F56B3.8 protein.
Length = 321
Score = 34.3 bits (75), Expect = 0.062
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 311 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVQLP 469
GN P+G++ GT++ ++E D +A+G AT++ H D T V+LP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 425 IGHNPDAKRTRVQLPSGAKKVLPSSNRGWSVLLLE 529
IGH D +RTR LP+G KKVL + + +LL++
Sbjct: 57 IGHGSD-RRTRFVLPNGYKKVLVQNVKDLDMLLMQ 90
>AC084154-12|AAK29876.1| 1137|Caenorhabditis elegans Hypothetical
protein Y22D7AR.12 protein.
Length = 1137
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 300 VAFFPQ*TNWPV*SLRSNEELLPCL--ELVWIAEVYNSQRCTSTRVMDYILNNSLDVSMT 127
+ F + TN P+ S++S E +P + +LV + E + S R +LN D S
Sbjct: 498 IQHFRESTNMPL-SIKSTAEAIPKIKTQLVDLKEYIEGKDIKSKRAAVNVLNELKDASSQ 556
Query: 126 FSVI 115
FSV+
Sbjct: 557 FSVL 560
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 129
+GR R+ +KG F +HT K L+ LD A++
Sbjct: 464 IGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500
>Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 130 HGYIKGVVKDIIHDPGRGAPLAVVHFR 210
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 130 HGYIKGVVKDIIHDPGRGAPLAVVHFR 210
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical
protein Y57G11C.44 protein.
Length = 155
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 67 VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 192
+S ++RK + LD+++ G K ++KDI +D + P+
Sbjct: 1 MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42
>AF273807-1|AAG15156.1| 416|Caenorhabditis elegans nuclear receptor
NHR-59 protein.
Length = 416
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 564 SSFQNRFVNTSTSSNNTDQPLLLDGRTFLAPDGSCTLVRLASGL 433
S+ QN+F++ S N Q L+ D + LAP G L +L+S L
Sbjct: 129 STSQNKFIDLSPFIKNCKQVLMDDRKIPLAP-GKTRLQKLSSSL 171
>AF016675-1|AAF02172.2| 416|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 59 protein.
Length = 416
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 564 SSFQNRFVNTSTSSNNTDQPLLLDGRTFLAPDGSCTLVRLASGL 433
S+ QN+F++ S N Q L+ D + LAP G L +L+S L
Sbjct: 129 STSQNKFIDLSPFIKNCKQVLMDDRKIPLAP-GKTRLQKLSSSL 171
>L11247-6|AAA28005.2| 367|Caenorhabditis elegans Hypothetical
protein F09G8.2 protein.
Length = 367
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -1
Query: 493 WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHH 317
W +L+ + TL++ N SG+ TC +TS TH + ++ G L +S++ H
Sbjct: 234 WNDLISRQN---KVTLAVESWLNGSGDDIHTTCTSTSQTHDVTEMRVTG-LNFASSKDH 288
>AF220526-1|AAF43009.1| 332|Caenorhabditis elegans DNAse II homolog
F09G8.2 protein.
Length = 332
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -1
Query: 493 WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHH 317
W +L+ + TL++ N SG+ TC +TS TH + ++ G L +S++ H
Sbjct: 209 WNDLISRQN---KVTLAVESWLNGSGDDIHTTCTSTSQTHDVTEMRVTG-LNFASSKDH 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,896,480
Number of Sequences: 27780
Number of extensions: 305391
Number of successful extensions: 831
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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