Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30955X
(568 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 127 6e-30
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 127 6e-30
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 124 3e-29
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 42 2e-04
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 42 2e-04
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 28 3.8
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 6.6
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co... 27 8.7
At2g42730.1 68415.m05292 F-box family protein contains F-box dom... 27 8.7
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 27 8.7
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 27 8.7
At1g53170.1 68414.m06025 ethylene-responsive element-binding fac... 27 8.7
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 127 bits (306), Expect = 6e-30
Identities = 58/83 (69%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FR P++FK +KELF+A + ++
Sbjct: 61 VAFRHPFRFKKQKELFVAAEGMY 83
Score = 120 bits (288), Expect = 9e-28
Identities = 50/81 (61%), Positives = 67/81 (82%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +GDRG ARASG++A VI HNPD
Sbjct: 83 YTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPD 142
Query: 443 AKRTRVQLPSGAKKVLPSSNR 505
+R++LPSG+KK++PS R
Sbjct: 143 NDTSRIKLPSGSKKIVPSGCR 163
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAG 564
++G VAGGGR +KP+LKAG
Sbjct: 165 MIGQVAGGGRTEKPMLKAG 183
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 127 bits (306), Expect = 6e-30
Identities = 58/83 (69%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FR P++FK +KELF+A + ++
Sbjct: 61 VTFRHPFRFKKQKELFVAAEGMY 83
Score = 124 bits (300), Expect = 3e-29
Identities = 53/81 (65%), Positives = 69/81 (85%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +GDRG LARASG++A VI HNPD
Sbjct: 83 YTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPD 142
Query: 443 AKRTRVQLPSGAKKVLPSSNR 505
+ TR++LPSG+KK++PS R
Sbjct: 143 SDTTRIKLPSGSKKIVPSGCR 163
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAG 564
++G VAGGGR +KP+LKAG
Sbjct: 165 MIGQVAGGGRTEKPMLKAG 183
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 124 bits (300), Expect = 3e-29
Identities = 52/81 (64%), Positives = 70/81 (86%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E +GDRG LARASG++A VI HNP+
Sbjct: 84 YTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPE 143
Query: 443 AKRTRVQLPSGAKKVLPSSNR 505
+ TRV+LPSG+KK+LPS+ R
Sbjct: 144 SNTTRVKLPSGSKKILPSACR 164
Score = 119 bits (287), Expect = 1e-27
Identities = 56/84 (66%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
Frame = +1
Query: 19 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 195
MGRVIRAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60
Query: 196 VVHFRDPYKFKTRKELFIAPKALH 267
V FR P+++ +KELF+A + ++
Sbjct: 61 RVAFRHPFRYMKQKELFVAAEGMY 84
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAG 564
++G VAGGGR +KP LKAG
Sbjct: 166 MIGQVAGGGRTEKPFLKAG 184
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +2
Query: 308 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVQLPSGAKK 484
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + ++LPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTK 116
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +2
Query: 308 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVQLPSGAKK 484
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + ++LPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTK 116
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 28.3 bits (60), Expect = 3.8
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -3
Query: 395 PDDLYHPFSLQDCTQWYPQA*-LQQASHFQLQELLSFHNKQIGLCRAFGAMKSSFLVLNL 219
P YH S + + P +QQ S +L + ++ + R FG+ ++S+ L L
Sbjct: 210 PQPFYHHLSSYNPHHYSPPTFSMQQGSRNRLSASTTSYSLPLKKLRVFGSYQASYHHLLL 269
Query: 218 YGSRKCTTAKGAPLPGSWIIS 156
SR KG SW+IS
Sbjct: 270 LRSRAILWFKGC----SWLIS 286
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 418 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 305
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
contains Pfam profile PF00856: SET domain
Length = 1423
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 79 KKRKGAPKL-RSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIA- 252
K +KG KL R +H + +KD+ D GR P+A+ ++K+LF++
Sbjct: 1122 KLQKGPNKLIRRRKPLAKHTTERSPIKDLSVDDGRPKPIALKPLEKLSSKPSKKKLFLSI 1181
Query: 253 PKA 261
PK+
Sbjct: 1182 PKS 1184
>At2g42730.1 68415.m05292 F-box family protein contains F-box domain
Pfam:PF00646
Length = 737
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -2
Query: 243 ELLPCLELVWIAEVYNSQRCTSTRVM 166
E LPCLELV I V NS +T M
Sbjct: 408 EKLPCLELVKICVVNNSNNLQTTMEM 433
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 443 HQDCVQSQWRSFQRHVPDDLYHPFSLQDCTQW 348
H+ Q WRS + HV D+L P ++C W
Sbjct: 667 HKFFKQVMWRSSKVHVADELQLP-PQEECVSW 697
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 320 SHFQLQELLSF--HNKQIGLCRAFGAMKSSFLVLNLYGS 210
S F Q LL F H +GL R G++ +V N +GS
Sbjct: 617 SRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGS 655
>At1g53170.1 68414.m06025 ethylene-responsive element-binding factor
8 / ERF transcription factor 8 (ERF8) identical to ERF
transcription factor 8 GI:10567108 from [Arabidopsis
thaliana]
Length = 185
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 389 RLARASGNFATVIGHNPDAKRTRVQLPSGAKKVLP 493
R +A NF ++G +P T V P+ A+ + P
Sbjct: 78 RGVKAKTNFGVIVGSSPTQSSTVVDSPTAARFITP 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,182,087
Number of Sequences: 28952
Number of extensions: 281836
Number of successful extensions: 829
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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