Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30954X
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48195.1 68416.m05258 phox (PX) domain-containing protein con...    27   5.0  
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila...    27   6.5  
At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containi...    27   6.5  
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea...    27   8.7  
At5g48940.1 68418.m06054 leucine-rich repeat transmembrane prote...    27   8.7  
At3g16510.1 68416.m02107 C2 domain-containing protein contains s...    27   8.7  
At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA he...    27   8.7  
At1g68020.2 68414.m07771 glycosyl transferase family 20 protein ...    27   8.7  
At1g68020.1 68414.m07770 glycosyl transferase family 20 protein ...    27   8.7  
At1g29710.1 68414.m03631 pentatricopeptide (PPR) repeat-containi...    27   8.7  
At1g17180.1 68414.m02094 glutathione S-transferase, putative Sec...    27   8.7  

>At3g48195.1 68416.m05258 phox (PX) domain-containing protein
           contains Pfam profile PF00787: PX domain
          Length = 938

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 85  DSRKLVSFAPEVAKKLKVLIQECLN 159
           +SRK+   +P    +  VLIQ+CLN
Sbjct: 551 ESRKIFGTSPNAVAERTVLIQDCLN 575


>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
           to WRN (Werner syndrome) protein - Mus musculus,
           EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00627: UBA/TS-N domain
          Length = 858

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = +1

Query: 124 KKLKVLIQECLNENGLGEDAIEVIRAGEYREDEPFQNLVYCAYKNSERSMKIIESSVKLQ 303
           KKL V+ +E   +   G    E I   +Y EDE  Q     A KNS    ++ E+ ++ +
Sbjct: 400 KKLAVISRESEEQTDFGSHDSENIHETDYDEDEEDQE-NSLAKKNSSNGKELSEAYLEDE 458

Query: 304 LRLSRKT*TWSL 339
             + +    W +
Sbjct: 459 TDIFQSVDDWDV 470


>At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 792

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 82  EDSRKLVSFAPEVAKKLKVLIQECLNENGLGEDAIEVIRAGEYREDEPFQNLVYC 246
           E +RKL   +PE +      +     +NGL EDAI + R  +  E  P    + C
Sbjct: 371 ESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITC 425


>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein 9
           (SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
           domain, G-beta repeat (4 copies)
          Length = 1677

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 256 FCKRNKLSSGMVRPLY-IHRHVLLLSRLHPSRFHSNTPESGL 134
           F   + LSSG  +  Y + RH LL   L P R+H+    SGL
Sbjct: 54  FLMLHLLSSGPCQKTYALLRHELLEHELLPRRYHAWYSRSGL 95


>At5g48940.1 68418.m06054 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1135

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 88  SRKLVSFAPEVAKKLKVLIQECLNENGL 171
           S  LV   P    KLK L + CLN NGL
Sbjct: 139 SNSLVGEIPSSLGKLKNLQELCLNSNGL 166


>At3g16510.1 68416.m02107 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 360

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -2

Query: 175 HPSRFHSNTPESGLSIF*PPP 113
           +P ++HS+ PE  ++++ PPP
Sbjct: 226 NPYQYHSHYPEQPVAVYPPPP 246


>At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA
           helicase, putative nearly identical to HUA enhancer 2
           [Arabidopsis thaliana] GI:16024936
          Length = 995

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -1

Query: 401 EVFEHLIYRGISIFLSAALDNSDHVYVFRERRSCNLTDDSIIFI 270
           E+   ++YRG  +    A    D ++  ++R    + ++SIIF+
Sbjct: 172 EILRAMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 215


>At1g68020.2 68414.m07771 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 860

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 160 ENGLGEDAIEVIRAGEYREDEPFQNLVYCAYKNSERSMKIIESSVKLQL 306
           ++GLG++AIEVI  G  +E+ P  N     Y+    S K + + + L L
Sbjct: 102 KDGLGDEAIEVIYVGCLKEEIPL-NEQEEVYQILLESFKCVPTFLPLDL 149


>At1g68020.1 68414.m07770 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 700

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 160 ENGLGEDAIEVIRAGEYREDEPFQNLVYCAYKNSERSMKIIESSVKLQL 306
           ++GLG++AIEVI  G  +E+ P  N     Y+    S K + + + L L
Sbjct: 102 KDGLGDEAIEVIYVGCLKEEIPL-NEQEEVYQILLESFKCVPTFLPLDL 149


>At1g29710.1 68414.m03631 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 475

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/74 (20%), Positives = 32/74 (43%)
 Frame = +1

Query: 82  EDSRKLVSFAPEVAKKLKVLIQECLNENGLGEDAIEVIRAGEYREDEPFQNLVYCAYKNS 261
           +D+ K+    PE       ++  C   NG GE+AI++    +   ++P   +    +   
Sbjct: 171 DDALKVFEEMPEWNSGTLCVMMRCFVNNGYGEEAIDLFTRFKEEGNKPNGEIFNQVFSTC 230

Query: 262 ERSMKIIESSVKLQ 303
             +  + E S++ Q
Sbjct: 231 TLTGDVKEGSLQFQ 244


>At1g17180.1 68414.m02094 glutathione S-transferase, putative Second
           of three repeated putative glutathione transferases. 72%
           identical to glutathione transferase [Arabidopsis
           thaliana] (gi|4006934). Location of ests 191A10T7
           (gb|R90188) and 171N13T7 (gb|R65532)
          Length = 221

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 85  DSRKLVSFAPEVAKKLKVLIQ 147
           DS K++ F PE+ KKL + I+
Sbjct: 201 DSEKIIKFVPELRKKLGIEIE 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,190,076
Number of Sequences: 28952
Number of extensions: 214409
Number of successful extensions: 618
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)