Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30953X
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)               88   3e-18
SB_14029| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    28   2.9  
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    27   3.8  
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)                26   8.8  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score = 87.8 bits (208), Expect = 3e-18
 Identities = 41/51 (80%), Positives = 46/51 (90%)
 Frame = +3

Query: 114 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELGKK 266
           LNN VLFDK TY+KLYKEVP Y+LITP+VVSERLK+RGSLARRAL+EL  K
Sbjct: 41  LNNLVLFDKATYDKLYKEVPSYRLITPSVVSERLKIRGSLARRALLELQSK 91



 Score = 43.6 bits (98), Expect = 5e-05
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +2

Query: 254 VREKGLIKQVVQHHGQVIYTRATKGDD 334
           ++ KGLIK+V +HH Q+IYTRATKG D
Sbjct: 88  LQSKGLIKEVSKHHSQLIYTRATKGAD 114


>SB_14029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 304 HLPMMLDYLFDETFFPNSMSALLAREPRTFNLSDTTAGVI 185
           H  +  DY F ET+ P S+   L       N+SDT+ GV+
Sbjct: 165 HDQLYPDYAFAETWMPESIVNGLRALGHKVNVSDTSHGVV 204


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 1   RTRRLRPNSLKKHRRRRKDPVAAKPRRR 84
           R RR  P      RRRRK P  + PRRR
Sbjct: 907 RRRRDSPTPSPPPRRRRKSPSPSPPRRR 934


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 1   RTRRLRPNSLKKHRRRRKDPVAAKPRRRSG 90
           R R+ RP   +++RR RK P+    R +SG
Sbjct: 554 RGRKRRPRLGRRNRRLRKTPIVCTKRGKSG 583


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 169 TSLYSFSYVGLSNNTWLFNLSRTFPLDH 86
           +SL+     G+SN+ WL N S T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277


>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 22  NSLKKHRRRRKDPVAAKPRRRSGPK 96
           N   KH  ++K PV   P+R  GPK
Sbjct: 304 NDKHKHNSKQKTPVVYFPKRPYGPK 328


>SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
 Frame = -1

Query: 304 HLPMMLDYLFDETFFPNSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 125
           H     ++ F   F  N           TF+ + T+      Y  TS ++F Y   SN+T
Sbjct: 16  HYTFTSNHTFHYAFTSNHTFHYAFTSNHTFHYTFTSHHTFH-YAFTSNHTFHYTFTSNHT 74

Query: 124 WLFNLSRTFPLDHFFFLA-LPPPDPSFFFCVF 32
           + +  + +    + F  A +P   PS     F
Sbjct: 75  FHYTFTSSHTFHYAFTKAIIPSTTPSLVIITF 106


>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1453

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 19  PNSLKKHRRRRKDPVAAKPRRRSGPKEK 102
           PN+LK+ +RR  +    KP  RS  K +
Sbjct: 67  PNALKREKRRTTNSANRKPANRSPSKRE 94


>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
          Length = 325

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 7   RRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 102
           R L   + K HR RR+  +A +PR  +GP EK
Sbjct: 190 RNLAGPAEKPHRSRRETQLA-QPRNPTGPAEK 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,295,988
Number of Sequences: 59808
Number of extensions: 267074
Number of successful extensions: 804
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)