Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30952X
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    30   0.16 
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.5  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    27   1.5  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   2.5  
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni...    26   3.4  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    22   4.9  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -2

Query: 463 HCLLPKQLHEHTD--AWSSCERCRAAMPCPSIGSNVLEPSLSSKMSTTTCNCNSR 305
           H LL +   +  D   W     C  A+ C     +V + SLSS + T TCNC  +
Sbjct: 200 HRLLDRSFVDDNDHLRWCPAPDCEFAIEC-----HVTQASLSSVVPTVTCNCGKQ 249


>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 142

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -2

Query: 466 SHCLL--PKQLHEHTDAWSSCERCRAAMPCPSIGSNVLEPSLSSKMSTTTCNC 314
           + C L  PK  H+H   WS  E C  A+     G   +   L S+ +   C+C
Sbjct: 58  ARCFLHNPKISHQHHSFWSLIEGCLEAL---QFGLLAILQGLFSQFAWEACSC 107


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 163 TPRETARPLDTMVKSPVFLTSTRGSLHLSKRPKTLL 56
           TPRETA+ L  ++ +P      R SL     PK LL
Sbjct: 207 TPRETAKELRNLIATPPCFAQARSSL---TTPKDLL 239


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
 Frame = -2

Query: 469 LSHCL-----LPKQLHEHTDAWSSCERCRAAMPCPSIGSNVLEPSLSSK-MSTTTCNCNS 308
           LSH L     LP     +T A  +     +++    +G+N + PSLSSK M       N+
Sbjct: 90  LSHALPGNTNLPNGTSTNTMASMAANGGASSVASKQMGANQISPSLSSKTMKNPADKANN 149

Query: 307 RDRVVYGGNSADS 269
                  GN+A S
Sbjct: 150 TTATDVRGNTATS 162


>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
           Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 442 LHEHTDAWSSCERCRAAMPCPSIGSNVLEPSLSS 341
           L   T  W++C++C++  P     + V+E   S+
Sbjct: 17  LESTTAQWTTCDQCQSVYPSEQFANLVVETKSSA 50


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 22.2 bits (45), Expect(2) = 4.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 277 RCCRRIQHG 303
           RCCR I+HG
Sbjct: 104 RCCRGIKHG 112



 Score = 21.4 bits (43), Expect(2) = 4.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 385 TASRPGSVHTTTRRLYARATVWAISSVR 468
           TA  PG + T      ++ATV AI  ++
Sbjct: 116 TADEPGLLKTAISIEVSKATVQAIQQIK 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,668,140
Number of Sequences: 5004
Number of extensions: 28276
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)