Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30952X
         (473 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8405| Best HMM Match : PAN (HMM E-Value=0.044)                      30   0.85 
SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)                    27   6.0  
SB_18846| Best HMM Match : I-set (HMM E-Value=0.057)                   27   7.9  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              27   7.9  
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         27   7.9  

>SB_8405| Best HMM Match : PAN (HMM E-Value=0.044)
          Length = 387

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 408 SHDDQASVCSCNCLGNKQCES 470
           S   +AS C CNC  +KQCE+
Sbjct: 103 SSSGEASACLCNCGSDKQCEA 123


>SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)
          Length = 445

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 167 VNASGDRKAVGHDGEVAGLPDIYSWF-ITPF*TTKDTV 57
           V   GD   + HDG+ A L ++++   +TP+  + DT+
Sbjct: 404 VKCEGDEPVIMHDGKEATLREVFAMLNLTPYDLSVDTL 441


>SB_18846| Best HMM Match : I-set (HMM E-Value=0.057)
          Length = 87

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 379 SIGSNVLEPSLSSKMSTTTCNCNSRDRVVYGGNSADST 266
           S+G   +    SSK    TCNC++     YG +SA++T
Sbjct: 48  SVGGVAVVAFDSSKQGVYTCNCSNE----YGADSAENT 81


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -2

Query: 430 TDAWSSCERCRAAMPCP-SIGSNVLE-PSLSSKMSTTTCNCNSRDR 299
           T+  +SC  C A   CP  +G++ L  PS S        NC   DR
Sbjct: 585 TNGQTSCTECSAGFYCPVELGTSQLPCPSGSFAKDKRGANCTQCDR 630


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 379  SIGSNVLEPSLSSKMSTTTCNCNSRDRVVYGGNSADST 266
            S+G   +    SSK    TCNC++     YG +SA++T
Sbjct: 1319 SVGGVAVVAFDSSKQGVYTCNCSNE----YGADSAENT 1352


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,360,107
Number of Sequences: 59808
Number of extensions: 242729
Number of successful extensions: 924
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)