Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30952X
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF039047-8|AAK95882.1|  149|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z35598-2|CAA84651.2|  656|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 196 STMPWSSVRS*TPRETARPLDTMVKSPVFLTST 98
           ST   ++  + TP+ + +P  T  KSPV +T+T
Sbjct: 388 STKKLTTTTTTTPKPSQKPTTTTTKSPVVITTT 420


>AF039047-8|AAK95882.1|  149|Caenorhabditis elegans Hypothetical
           protein K11D12.11 protein.
          Length = 149

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 427 DAWSSCERCRAA--MPCPSIGSNVLEPSLSSKMSTTTCNCNSRDRVVYGGNS 278
           D W  C RC AA    CP +GS +++   ++  +TTTC     D    G NS
Sbjct: 24  DTWGKCMRCFAADYSGCP-VGSALVK---NTDRNTTTCEVRG-DEKCTGPNS 70


>Z35598-2|CAA84651.2|  656|Caenorhabditis elegans Hypothetical
           protein F10F2.4 protein.
          Length = 656

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 469 LSHCLLPKQLHEHTDAWSSCERCRAAMPCPSIGSNVL 359
           +SHC LP  LHE  D W++C +   ++    IG+  L
Sbjct: 267 ISHCQLP--LHE--DTWTACGQFLHSLDISGIGAKRL 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,637,396
Number of Sequences: 27780
Number of extensions: 173314
Number of successful extensions: 602
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)