Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30952X
         (473 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79720.1 68414.m09298 aspartyl protease family protein contai...    29   1.6  
At4g06479.1 68417.m00885 hypothetical protein                          29   2.1  
At4g23250.1 68417.m03352 protein kinase family protein contains ...    27   4.9  
At5g54070.1 68418.m06731 heat shock transcription factor family ...    27   6.5  
At5g28823.1 68418.m03544 hypothetical protein                          27   6.5  
At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica...    27   6.5  
At1g13230.1 68414.m01535 leucine-rich repeat family protein cont...    27   8.6  

>At1g79720.1 68414.m09298 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 484

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 421 WSSCERCRAAMPCPSIGSNVLEPSLSSKMSTTTCNCNS-RDRVVYGGNS 278
           W  C+ CR+   C +    + +PS+SS   T  CN ++ +D V    NS
Sbjct: 158 WVQCQPCRS---CYNQQGPLYDPSVSSSYKTVFCNSSTCQDLVAATSNS 203


>At4g06479.1 68417.m00885 hypothetical protein
          Length = 370

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
 Frame = -2

Query: 472 PLSHCLLPKQLHEHTDAWSSCERCRA----AMPCPSIGSNVLEPSL---SSKMSTTT 323
           P   CL P Q   +TD ++ C  C      +M C  I  N  E SL      M+TTT
Sbjct: 307 PTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYCLYIAPNAGEGSLRGVGPLMTTTT 363


>At4g23250.1 68417.m03352 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 998

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 220 RTSFSYLAGWKNIAPWCCQRCCR 288
           +T ++++   K+I+PW C RC R
Sbjct: 853 QTVYAFVLCSKDISPWNCSRCLR 875


>At5g54070.1 68418.m06731 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 331

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 336 IFEDKEGSRTLLPIEGHGIAARQRSHDDQASVCSCNCLGNKQCE 467
           + +D+E  + LL +E   +A     H+ +  +   N  GN +C+
Sbjct: 266 LLQDQETQKNLLDVEREFMAMAATEHNPEPDILVNNQSGNTRCQ 309


>At5g28823.1 68418.m03544 hypothetical protein
          Length = 568

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 111 KTGDFTIVSNGLAVSRGVHDRTELQGIVELAIVDEEQDVVFVLGGLEE 254
           K  D  IVSNG A+ +G H   +   ++ L ++    D +      EE
Sbjct: 362 KALDTAIVSNGAAILKGFHKTVDDTSVLPLQVIGTITDFLSSSNSKEE 409


>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|P41410
           DNA repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1256

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +1

Query: 40  IIHEHITVSLVV*KGVMNHE*MSGRPATSPSCPTALRSPEAFTIVPSSKASLNWRL*MKN 219
           I  + I  ++V   GV +H      P  S   P+A  S   ++++P  K  L+    +  
Sbjct: 625 INEDDINTTIVNQDGVESHTFTI--PVASSDMPSAEESDNVWSLIPQLKRKLH----LHQ 678

Query: 220 RTSFSYLAGWKNIA 261
           + +F +L  WKN+A
Sbjct: 679 KKAFEFL--WKNLA 690


>At1g13230.1 68414.m01535 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to gb|U42445
           Cf-2.2 from Lycopersicon pimpinellifolium
          Length = 424

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 364 VLEPSLSSKMSTTTCNCNSRDRVVYGGNS 278
           VLE   S ++  + CN     R+V+ GNS
Sbjct: 174 VLENGFSGELPASICNLKRLKRLVFAGNS 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,938,586
Number of Sequences: 28952
Number of extensions: 156421
Number of successful extensions: 469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)